1CLZ
IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
- PDB DOI: https://doi.org/10.2210/pdb1CLZ/pdb
- Classification: IMMUNOGLOBULIN
- Organism(s): Mus musculus
- Mutation(s): No 
- Deposited: 1995-03-15 Released: 1996-08-01 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.295 
- R-Value Work: 0.197 
- R-Value Observed: 0.197 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
IGG FAB (IGG3, KAPPA) | A [auth L] | 219 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
IGG FAB (IGG3, KAPPA) | B [auth H] | 218 | Mus musculus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P03987 (Mus musculus) Explore P03987  Go to UniProtKB:  P03987 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03987 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | C [auth A] | 4 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G00052MO GlyCosmos:  G00052MO GlyGen:  G00052MO |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NON Query on NON | D [auth H] | METHYL NONANOATE (ESTER) C10 H20 O2 IJXHLVMUNBOGRR-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 3 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900054 Query on PRD_900054 | C [auth A] | Lewis Y antigen, beta anomer | Oligosaccharide / Antigen |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.295 
- R-Value Work: 0.197 
- R-Value Observed: 0.197 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.4 | α = 90 |
b = 84.9 | β = 90 |
c = 86.8 | γ = 90 |
Software Name | Purpose |
---|---|
XENGEN | data collection |
XENGEN | data reduction |
X-PLOR | refinement |
XENGEN | data scaling |
Entry History 
Deposition Data
- Released Date: 1996-08-01  Deposition Author(s): Sheriff, S., Bajorath, J.
Revision History (Full details and data files)
- Version 1.0: 1996-08-01
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Structure summary