1C1Z
CRYSTAL STRUCTURE OF HUMAN BETA-2-GLYCOPROTEIN-I (APOLIPOPROTEIN-H)
- PDB DOI: https://doi.org/10.2210/pdb1C1Z/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 1999-07-22 Released: 1999-11-19 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.244 
- R-Value Work: 0.238 
- R-Value Observed: 0.238 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
BETA2-GLYCOPROTEIN-I | 326 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P02749 (Homo sapiens) Explore P02749  Go to UniProtKB:  P02749 | |||||
PHAROS:  P02749 GTEx:  ENSG00000091583  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02749 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G07375KG GlyCosmos:  G07375KG GlyGen:  G07375KG |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G71418BC GlyCosmos:  G71418BC GlyGen:  G71418BC |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.244 
- R-Value Work: 0.238 
- R-Value Observed: 0.238 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 159.5 | α = 90 |
b = 164.8 | β = 90 |
c = 114.3 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data scaling |
XDS | data reduction |
SHARP | phasing |
CNS | refinement |
Entry History 
Deposition Data
- Released Date: 1999-11-19  Deposition Author(s): Schwarzenbacher, R., Zeth, K., Diederichs, K., Gries, A., Kostner, G.M., Laggner, P., Prassl, R.
Revision History (Full details and data files)
- Version 1.0: 1999-11-19
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary