1BEV

BOVINE ENTEROVIRUS VG-5-27


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Work: 0.225 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Implications for viral uncoating from the structure of bovine enterovirus.

Smyth, M.Tate, J.Hoey, E.Lyons, C.Martin, S.Stuart, D.

(1995) Nat Struct Biol 2: 224-231

  • DOI: https://doi.org/10.1038/nsb0395-224
  • Primary Citation of Related Structures:  
    1BEV

  • PubMed Abstract: 

    We have determined the crystal structure of a bovine enterovirus, revealing that the topologies of the major capsid proteins and the overall architecture of the virion are similar to those of related picornaviruses. The external loops joining beta-strands are truncated and the canyon region is partially filled by an extension of the VP3 G-H loop giving the viral capsid a relatively smooth appearance. These changes may have implications for cell attachment. In spite of these differences the virus maintains a hydrophobic pocket within VP1, occupied by a specific 'pocket factor' which appears to be myristic acid. These observations support the proposal that a kinetic equilibrium exists between occupied and unoccupied pocket states, with occupation inhibiting uncoating.


  • Organizational Affiliation

    Laboratory of Molecular Biophysics, Oxford, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4A [auth 1]281Bovine enterovirus strain VG-5-27Mutation(s): 0 
UniProt
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
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Go to UniProtKB:  P12915
Entity Groups  
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UniProt GroupP12915
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4B [auth 2]248Bovine enterovirus strain VG-5-27Mutation(s): 0 
UniProt
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Explore P12915 
Go to UniProtKB:  P12915
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UniProt GroupP12915
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4C [auth 3]242Bovine enterovirus strain VG-5-27Mutation(s): 0 
UniProt
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Explore P12915 
Go to UniProtKB:  P12915
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UniProt GroupP12915
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4D [auth 4]68Bovine enterovirus strain VG-5-27Mutation(s): 0 
UniProt
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Explore P12915 
Go to UniProtKB:  P12915
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12915
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download Ideal Coordinates CCD File 
F [auth 1]MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
E [auth 1],
G [auth 2]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Work: 0.225 
  • R-Value Observed: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 388.2α = 90
b = 392.6β = 112.7
c = 360.7γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-09-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references, Derived calculations, Other