1B9T
NOVEL AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE MAKE SELECTIVE INTERACTIONS WITH CONSERVED RESIDUES AND WATER MOLECULES IN THE ACTIVE SITE
- PDB DOI: https://doi.org/10.2210/pdb1B9T/pdb
- Classification: HYDROLASE
- Organism(s): Influenza B virus (B/Lee/1940)
- Mutation(s): No 
- Deposited: 1999-02-15 Released: 1999-02-27 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.271 
- R-Value Work: 0.195 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PROTEIN (NEURAMINIDASE) | 390 | Influenza B virus (B/Lee/1940) | Mutation(s): 0  EC: 3.2.1.18 | ||
UniProt | |||||
Find proteins for P03474 (Influenza B virus (strain B/Lee/1940)) Explore P03474  Go to UniProtKB:  P03474 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03474 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RAI Query on RAI | E [auth A] | 1-(4-CARBOXY-2-GUANIDINOPENTYL)-5,5'-DI(HYDROXYMETHYL)PYRROLIDIN-2-ONE C14 H18 N4 O5 IRNYFKBSAARAHR-UHFFFAOYSA-N | |||
NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.271 
- R-Value Work: 0.195 
- Space Group: P 4 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 124.5 | α = 90 |
b = 124.5 | β = 90 |
c = 71.412 | γ = 90 |
Software Name | Purpose |
---|---|
SAINT | data scaling |
SAINT | data reduction |
X-PLOR | model building |
X-PLOR | refinement |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 1999-02-27  Deposition Author(s): Finley, J.B., Atigadda, V.R., Duarte, F., Zhao, J.J., Brouillette, W.J., Air, G.M., Luo, M.
Revision History (Full details and data files)
- Version 1.0: 1999-02-27
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-09
Changes: Data collection, Database references, Refinement description, Structure summary