Download MendeleyNortheast Structural Genomics Consortium Target GmR87
Kuzin, A., Chen, Y., Seetharaman, J., Fang, F., Xiao, R., Cunningham, K., Ma, L., Owens, L., Chen, C.X., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.To be published.
4H9D
Crystal Structure of Mn-dependent Gme HNH nicking endonuclease from Geobacter metallireducens GS-15, Northeast Structural Genomics Consortium (NESG) Target GmR87
- PDB DOI: https://doi.org/10.2210/pdb4H9D/pdb
- Entry: 4H9D supersedes: 2QGP
- Classification: HYDROLASE
- Organism(s): Geobacter metallireducens GS-15
- Mutation(s): No
- Deposited: 2012-09-24 Released: 2012-10-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.251
- R-Value Work: 0.233
- R-Value Observed: 0.234
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HNH endonuclease | 112 | Geobacter metallireducens GS-15 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q39X46 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)) Explore Q39X46 Go to UniProtKB: Q39X46 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q39X46 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | D [auth A], E [auth B], G [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.251
- R-Value Work: 0.233
- R-Value Observed: 0.234
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.674 | α = 90 |
| b = 83.385 | β = 90 |
| c = 225.116 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2012-10-10 Deposition Author(s): Kuzin, A., Chen, Y., Seetharaman, J., Fang, F., Xiao, R., Cunningham, K., Ma, L., Owens, L., Chen, C.X., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
- This entry supersedes: 2QGP
Revision History (Full details and data files)
- Version 1.0: 2012-10-10
Type: Initial release
