Download MendeleyCrystal structure of the VP0956 protein from Vibrio parahaemolyticus.
Vorobiev, S., Neely, H., Seetharaman, J., Wang, D., Mao, L., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.To be published.
3NLC
Crystal structure of the VP0956 protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR147
- PDB DOI: https://doi.org/10.2210/pdb3NLC/pdb
- Classification: Structural Genomics, Unknown function
- Organism(s): Vibrio parahaemolyticus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2010-06-21 Released: 2010-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.271
- R-Value Work: 0.215
- R-Value Observed: 0.218
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein VP0956 | 549 | Vibrio parahaemolyticus | Mutation(s): 1 Gene Names: VP0956 |  | |
UniProt | |||||
Find proteins for Q87R42 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87R42 Go to UniProtKB: Q87R42 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87R42 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | B [auth A] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.271
- R-Value Work: 0.215
- R-Value Observed: 0.218
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.079 | α = 90 |
| b = 78.166 | β = 90 |
| c = 101.875 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| SHELXDE | phasing |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-08-18 Deposition Author(s): Vorobiev, S., Neely, H., Seetharaman, J., Wang, D., Mao, L., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2010-08-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
