Download MendeleyCrystal Structure of the Flavodoxin-like domain from Synechococcus sp. Q5MZP6_SYNP6 protein.
Vorobiev, S., Su, M., Lee, D., Ciccosanti, C., Sahdev, S., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.To be published.
3HLY
Crystal Structure of the Flavodoxin-like domain from Synechococcus sp Q5MZP6_SYNP6 protein. Northeast Structural Genomics Consortium Target SnR135d.
- PDB DOI: https://doi.org/10.2210/pdb3HLY/pdb
- Classification: FLAVOPROTEIN
- Organism(s): Synechococcus elongatus PCC 6301
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-05-28 Released: 2009-06-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.250
- R-Value Work: 0.225
- R-Value Observed: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Flavodoxin-like domain | 161 | Synechococcus elongatus PCC 6301 | Mutation(s): 0 Gene Names: dfa1, syc2284_c |  | |
UniProt | |||||
Find proteins for A0A0H3K5M0 (Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)) Explore A0A0H3K5M0 Go to UniProtKB: A0A0H3K5M0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3K5M0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | D [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.250
- R-Value Work: 0.225
- R-Value Observed: 0.226
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.27 | α = 90 |
| b = 97.899 | β = 90 |
| c = 118.076 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| SHELXDE | phasing |
| RESOLVE | model building |
| PHENIX | refinement |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2009-06-09 Deposition Author(s): Vorobiev, S., Su, M., Lee, D., Ciccosanti, C., Sahdev, S., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2009-06-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description
