2ID1
X-Ray Crystal Structure of Protein CV0518 from Chromobacterium violaceum, Northeast Structural Genomics Consortium Target CvR5.
- PDB DOI: https://doi.org/10.2210/pdb2ID1/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Chromobacterium violaceum ATCC 12472
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-09-13 Released: 2006-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.269
- R-Value Work: 0.228
- R-Value Observed: 0.228
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein | 130 | Chromobacterium violaceum ATCC 12472 | Mutation(s): 3 Gene Names: CV_0518 |  | |
UniProt | |||||
Find proteins for Q7P0P8 (Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)) Explore Q7P0P8 Go to UniProtKB: Q7P0P8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7P0P8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IOD Query on IOD | C [auth A], D [auth B] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.269
- R-Value Work: 0.228
- R-Value Observed: 0.228
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.188 | α = 90 |
| b = 76.099 | β = 90 |
| c = 74.55 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| ADSC | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SnB | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| XTALVIEW | refinement |
Entry History
Deposition Data
- Released Date: 2006-09-26 Deposition Author(s): Forouhar, F., Zhou, W., Seetharaman, J., Ho, C.K., Janjua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2006-09-26
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description
