2EWO

X-ray structure of putative agmatine deiminase Q8DW17, Northeast Structural Genomics target SmR6.

PDB DOI: https://doi.org/10.2210/pdb2EWO/pdb

Classification: HYDROLASE
Organism(s): Streptococcus mutans
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-11-04 Released: 2005-12-06
Deposition Author(s): Kuzin, A.P., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.269
R-Value Work: 0.235
R-Value Observed: 0.235

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

X-ray structure of putative agmatine deiminase Q8DW17, Northeast Structural Genomics target SmR6.

Kuzin, A.P., Chen, Y., Vorobiev, S.M., Su, M., Forouhar, F., Acton, T., Xiao, R., Conover, K., Ma, L.-C., Kellie, R., Cunningham, K.E., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 519.97 kDa
Atom Count: 34,934
Modelled Residue Count: 4,351
Deposited Residue Count: 4,524
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative agmatine deiminase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	377	Streptococcus mutans	Mutation(s): 8 Gene Names: aguA EC: 3.5.3.12
UniProt
Find proteins for Q8DW17 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DW17 Go to UniProtKB: Q8DW17
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8DW17
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.269
R-Value Work: 0.235
R-Value Observed: 0.235
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.524	α = 90
b = 203.685	β = 104.72
c = 139.543	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-12-06

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2005-12-06
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.