1YVW

Crystal structure of Phosphoribosyl-ATP pyrophosphohydrolase from Bacillus cereus. NESGC target BcR13.

PDB DOI: https://doi.org/10.2210/pdb1YVW/pdb

Classification: HYDROLASE
Organism(s): Bacillus cereus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-02-16 Released: 2005-03-01
Deposition Author(s): Benach, J., Kuzin, A.P., Forouhar, F., Abashidze, M., Vorobiev, S.M., Shastry, R., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.263
R-Value Work: 0.244
R-Value Observed: 0.244

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Phosphoribosyl-ATP pyrophosphohydrolase from Bacillus cereus at 2.6 A resolution.

Benach, J., Kuzin, A.P., Forouhar, F., Abashidze, M., Vorobiev, S.M., Shastry, R., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 54.71 kDa
Atom Count: 3,157
Modelled Residue Count: 368
Deposited Residue Count: 460
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoribosyl-ATP pyrophosphatase	A, B, C, D	115	Bacillus cereus	Mutation(s): 3 Gene Names: hisE EC: 3.6.1.31
UniProt
Find proteins for Q81G00 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q81G00 Go to UniProtKB: Q81G00
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q81G00
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.263
R-Value Work: 0.244
R-Value Observed: 0.244
Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.959	α = 90
b = 81.959	β = 90
c = 222.978	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-03-01

Deposition Author(s):

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2005-03-01
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.