Download MendeleyX-Ray structure of Northeast Structural Genomics target SR44
Kuzin, A.P., Jianwei, S., Vorobiev, S., Acton, T., Xia, R., Ma, L.-C., Montelione, G., Tong, L., Hunt, J.F.To be published.
1YDM
X-Ray structure of Northeast Structural Genomics target SR44
- PDB DOI: https://doi.org/10.2210/pdb1YDM/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-12-24 Released: 2005-01-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.304
- R-Value Work: 0.224
- R-Value Observed: 0.224
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein yqgN | 187 | Bacillus subtilis | Mutation(s): 3 Gene Names: yqgN |  | |
UniProt | |||||
Find proteins for P54491 (Bacillus subtilis (strain 168)) Explore P54491 Go to UniProtKB: P54491 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P54491 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], E [auth B], F [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.304
- R-Value Work: 0.224
- R-Value Observed: 0.224
- Space Group: P 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.302 | α = 90 |
| b = 44.276 | β = 104.99 |
| c = 85.296 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-01-18 Deposition Author(s): Kuzin, A.P., Jianwei, S., Vorobiev, S., Acton, T., Xia, R., Ma, L.-C., Montelione, G., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2005-01-18
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance
