Download MendeleyX-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.
Kuzin, A.P., Chen, Y., Vorobiev, S.M., Acton, T.B., Ma, L.-C., Xiao, R., Montelione, G.T., Hunt, J.F., Tong, L.To be published.
1XW8
X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.
- PDB DOI: https://doi.org/10.2210/pdb1XW8/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-10-29 Released: 2004-11-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.265
- R-Value Work: 0.241
- R-Value Observed: 0.241
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0271 protein ybgL | 252 | Escherichia coli | Mutation(s): 6 Gene Names: ybgL |  | |
UniProt | |||||
Find proteins for P75746 (Escherichia coli (strain K12)) Explore P75746 Go to UniProtKB: P75746 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P75746 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.265
- R-Value Work: 0.241
- R-Value Observed: 0.241
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.669 | α = 90 |
| b = 37.208 | β = 93.97 |
| c = 79.801 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2004-11-09 Deposition Author(s): Kuzin, A.P., Chen, Y., Vorobiev, S.M., Acton, T.B., Ma, L.-C., Xiao, R., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2004-11-09
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-03-06
Changes: Data collection, Database references, Derived calculations
