Download MendeleyX-ray Structure of YDII_ECOLI Northeast Structural Genomics Consortium Target ER29
Kuzin, A.P., Edstrom, W., Vorobiev, S.M., Lee, I., Forouhar, F., Ma, L., Chiang, Y., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.To be published.
1SBK
X-RAY STRUCTURE OF YDII_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER29.
- PDB DOI: https://doi.org/10.2210/pdb1SBK/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2004-02-10 Released: 2004-02-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.272
- R-Value Work: 0.223
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein ydiI | 144 | Escherichia coli | Mutation(s): 4 Gene Names: YDII, B1686 |  | |
UniProt | |||||
Find proteins for P77781 (Escherichia coli (strain K12)) Explore P77781 Go to UniProtKB: P77781 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P77781 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth B], G [auth C], H [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.272
- R-Value Work: 0.223
- R-Value Observed: 0.223
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.642 | α = 90 |
| b = 61.196 | β = 104.66 |
| c = 93.008 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| CCP4 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2004-02-24 Deposition Author(s): Kuzin, A.P., Edstrom, W., Vorobiev, S.M., Lee, I., Forouhar, F., Ma, L., Chiang, Y., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2004-02-24
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2023-11-15
Changes: Data collection
