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Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ADP and 8-aminocaprylic acid
3QXH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 28188.65
    Molecule: Dethiobiotin synthetase
    Polymer: 1 Type: protein Length: 242
    Chains: A
    EC#: 6.3.3.3   
    Organism: Helicobacter pylori 26695
    Gene Names: bioD HP_0029
    UniProtKB: Protein Feature View | Search PDB | O24872  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Helicobacter pylori   Taxonomy   Common Name: Campylobacter pylori Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2QMO  Crystal structure of dethiobiotin synthetase (bioD) from Helicobacter pylori 
    3MLE  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori cocrystallized with ATP 
    3QXC  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ATP 
    3QXJ  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP 
    3QXS  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ANP 
    3QXX  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP and 8-aminocaprylic acid 
    3QY0  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP 
     
  •   Ligand Chemical Component Hide
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    ADP
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    ADP
    N/Ain BindingDB
    Kd: 5800 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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