Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ADP and 8-aminocaprylic acid DOI:10.2210/pdb3qxh/pdb

3QXH   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ligase Structure Weight: 28188.65 Molecule: Dethiobiotin synthetase Polymer: 1 Type: protein Length: 242 Chains: A EC#: 6.3.3.3    Organism Helicobacter pylori 26695 Gene Names bioD HP_0029 UniProtKB:   Protein Feature View | Search PDB | O24872         Source Hide Polymer: 1 Scientific Name: Helicobacter pylori   Taxonomy   Common Name: Campylobacter pylori Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 2QMO  Crystal structure of dethiobiotin synthetase (bioD) from Helicobacter pylori  3MLE  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori cocrystallized with ATP  3QXC  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ATP  3QXJ  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP  3QXS  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ANP  3QXX  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP and 8-aminocaprylic acid  3QY0  Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP      Ligand Chemical Component Hide Identifier Formula Name Interactions 8AC Search  Download  C8 H17 N O2 8-aminooctanoic acid   Ligand Explorer ADP Search  Download  C10 H15 N5 O10 P2 ADENOSINE-5'-DIPHOSPHATE   Ligand Explorer EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer PO4 Search  Download  O4 P PHOSPHATE ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 2 Domains - data from Pfam   GO Terms: 8 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Porebski, P.J.,  Klimecka, M.M.,  Chruszcz, M.,  Murzyn, K.,  Minor, C.,  Joachimiak, A.,  Minor, W.,  Midwest Center for Structural Genomics Deposition:   2011-03-01 Release:   2011-03-30 Last Modified (REVDAT):   2013-03-27     Revision History    Hide Mouse over text for details 2013-03-27 Citation 2012-03-28 Citation 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.36 R-Value: 0.119 (obs.) R-Free: 0.142 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 81.53 α = 90.00  b = 37.97 β = 101.15  c = 68.79 γ = 90.00