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Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR42A
3I8E
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Protein Binding
    Structure Weight: 257685.30
    Molecule: DNA damage-binding protein 1
    Polymer: 1 Type: protein Length: 1143
    Chains: A, B
    Organism Homo sapiens
    Gene Names DDB1 XAP1
    UniProtKB:   Protein Feature View | Search PDB | Q16531  
    Molecule: WD repeat-containing protein 42A
    Polymer: 2 Type: protein Length: 13
    Chains: C, D
    Fragment: Residues 153-165
    Organism Homo sapiens
    Gene Names DCAF8 H326 WDR42A
    UniProtKB:   Protein Feature View | Search PDB | Q5TAQ9  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2B5M  Crystal Structure of DDB1 
    3I7H  Crystal Structure of DDB1 in Complex with the H-Box Motif of HBX 
    3I7K  Crystal Structure of DDB1 in Complex with the H-Box Motif of WHX 
    3I7L  Crystal Structure of DDB1 in Complex with the H-Box Motif of DDB2 
    3I7N  Crystal Structure of DDB1 in Complex with the H-Box Motif of WDTC1 
    3I7O  Crystal Structure of DDB1 in Complex with the H-Box Motif of IQWD1 
    3I7P  Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR40A 
    3I89  Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR22 
    3I8C  Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR21A 
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Li, T.,  Robert, E.I.,  Breugel, P.C.V.,  Strubin, M.,  Zheng, N.

    Deposition:   2009-07-09
    Release:   2009-12-08
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.40
    R-Value: 0.264 (obs.)
    R-Free: 0.338
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 64.14 α = 90.00 
    b = 133.82 β = 90.45 
    c = 184.00 γ = 90.00