Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting DOI:10.2210/pdb3i1s/pdb   NDB ID: NA0079

3I1S   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3I1Q   3I1R   3I1S   3I1T     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 794026.70 Molecule: 30S ribosomal protein S2 Polymer: 1 Type: protein Length: 241 Chains: B Organism Escherichia coli K-12 Gene Names rpsB b0169 JW0164 UniProtKB:   Protein Feature View | Search PDB | P0A7V0     Molecule: 30S ribosomal protein S3 Polymer: 2 Type: protein Length: 233 Chains: C Organism Escherichia coli K-12 Gene Names rpsC b3314 JW3276 UniProtKB:   Protein Feature View | Search PDB | P0A7V3     Molecule: 30S ribosomal protein S4 Polymer: 3 Type: protein Length: 206 Chains: D Organism Escherichia coli K-12 Gene Names rpsD ramA b3296 JW3258 UniProtKB:   Protein Feature View | Search PDB | P0A7V8     Molecule: 30S ribosomal protein S5 Polymer: 4 Type: protein Length: 167 Chains: E Organism Escherichia coli K-12 Gene Names rpsE spc b3303 JW3265 UniProtKB:   Protein Feature View | Search PDB | P0A7W1     Molecule: 30S ribosomal protein S6 Polymer: 5 Type: protein Length: 135 Chains: F Organism Escherichia coli K-12 Gene Names rpsF b4200 JW4158 UniProtKB:   Protein Feature View | Search PDB | P02358     Molecule: 30S ribosomal protein S7 Polymer: 6 Type: protein Length: 179 Chains: G Organism Escherichia coli K-12 Gene Names rpsG b3341 JW3303 UniProtKB:   Protein Feature View | Search PDB | P02359     Molecule: 30S ribosomal protein S8 Polymer: 7 Type: protein Length: 130 Chains: H Organism Escherichia coli K-12 Gene Names rpsH b3306 JW3268 UniProtKB:   Protein Feature View | Search PDB | P0A7W7     Molecule: 30S ribosomal protein S9 Polymer: 8 Type: protein Length: 130 Chains: I Organism Escherichia coli K-12 Gene Names rpsI b3230 JW3199 UniProtKB:   Protein Feature View | Search PDB | P0A7X3     Molecule: 30S ribosomal protein S10 Polymer: 9 Type: protein Length: 103 Chains: J Organism Escherichia coli K-12 Gene Names rpsJ nusE b3321 JW3283 UniProtKB:   Protein Feature View | Search PDB | P0A7R5     Molecule: 30S ribosomal protein S11 Polymer: 10 Type: protein Length: 129 Chains: K Organism Escherichia coli K-12 Gene Names rpsK b3297 JW3259 UniProtKB:   Protein Feature View | Search PDB | P0A7R9     Molecule: 30S ribosomal protein S12 Polymer: 11 Type: protein Length: 124 Chains: L Organism Escherichia coli K-12 Gene Names rpsL strA b3342 JW3304 UniProtKB:   Protein Feature View | Search PDB | P0A7S3     Molecule: 30S ribosomal protein S13 Polymer: 12 Type: protein Length: 118 Chains: M Organism Escherichia coli K-12 Gene Names rpsM b3298 JW3260 UniProtKB:   Protein Feature View | Search PDB | P0A7S9     Molecule: 30S ribosomal protein S14 Polymer: 13 Type: protein Length: 101 Chains: N Organism Escherichia coli K-12 Gene Names rpsN b3307 JW3269 UniProtKB:   Protein Feature View | Search PDB | P0AG59     Molecule: 30S ribosomal protein S15 Polymer: 14 Type: protein Length: 89 Chains: O Organism Escherichia coli K-12 Gene Names rpsO secC b3165 JW3134 UniProtKB:   Protein Feature View | Search PDB | P0ADZ4     Molecule: 30S ribosomal protein S16 Polymer: 15 Type: protein Length: 82 Chains: P Organism Escherichia coli K-12 Gene Names rpsP b2609 JW2590 UniProtKB:   Protein Feature View | Search PDB | P0A7T3     Molecule: 30S ribosomal protein S17 Polymer: 16 Type: protein Length: 84 Chains: Q Organism Escherichia coli K-12 Gene Names rpsQ neaA b3311 JW3273 UniProtKB:   Protein Feature View | Search PDB | P0AG63     Molecule: 30S ribosomal protein S18 Polymer: 17 Type: protein Length: 75 Chains: R Organism Escherichia coli K-12 Gene Names rpsR b4202 JW4160 UniProtKB:   Protein Feature View | Search PDB | P0A7T7     Molecule: 30S ribosomal protein S19 Polymer: 18 Type: protein Length: 92 Chains: S Organism Escherichia coli K-12 Gene Names rpsS b3316 JW3278 UniProtKB:   Protein Feature View | Search PDB | P0A7U3     Molecule: 30S ribosomal protein S20 Polymer: 19 Type: protein Length: 87 Chains: T Organism Escherichia coli K-12 Gene Names rpsT b0023 JW0022 UniProtKB:   Protein Feature View | Search PDB | P0A7U7     Molecule: 30S ribosomal protein S21 Polymer: 20 Type: protein Length: 71 Chains: U Organism Escherichia coli K-12 Gene Names rpsU b3065 JW3037 UniProtKB:   Protein Feature View | Search PDB | P68679     Molecule: 16S rRNA Polymer: 21 Type: rna Length: 1530 Chains: A Organism Escherichia coli Molecule: P-site tRNA ASL fragment Polymer: 22 Type: rna Length: 17 Chains: V Fragment: RNA hairpin Molecule: messenger RNA Polymer: 23 Type: rna Length: 6 Chains: W     Source Hide Polymer: 1 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 3 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 4 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 5 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 6 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 7 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 8 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 9 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 10 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 11 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 12 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 13 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 14 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 15 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 16 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 17 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 18 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 19 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 20 Scientific Name: Escherichia coli k-12   Taxonomy     Polymer: 21 Scientific Name: Escherichia coli   Taxonomy     Polymer: 22 Scientific Name: Synthetic construct   Taxonomy     Polymer: 23 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3I1M    3I1N    3I1O    3I1P    3I1Z    3I20    3I21    3I22        Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 16 Domains - data from CATH   Pfam Classification: 23 Domains - data from Pfam   GO Terms: 199 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0079     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (3I1Q and 3I1R)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Zhang, W.,  Dunkle, J.A.,  Cate, J.H.D. Deposition:   2009-06-27 Release:   2009-09-01 Last Modified (REVDAT):   2013-02-27     Revision History    Hide Mouse over text for details 2013-02-27 Other 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.81 R-Value: 0.208 (obs.) R-Free: 0.253 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 210.72 α = 90.00  b = 435.07 β = 90.00  c = 628.73 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA