3H2T

Crystal structure of gene product 6, baseplate protein of bacteriophage T4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.234 

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This is version 1.4 of the entry. See complete history


Literature

The structure of gene product 6 of bacteriophage t4, the hinge-pin of the baseplate.

Aksyuk, A.A.Leiman, P.G.Shneider, M.M.Mesyanzhinov, V.V.Rossmann, M.G.

(2009) Structure 17: 800-808

  • DOI: https://doi.org/10.1016/j.str.2009.04.005
  • Primary Citation of Related Structures:  
    3H2T, 3H3W, 3H3Y

  • PubMed Abstract: 

    The baseplate of bacteriophage T4 is a multicomponent protein complex, which controls phage attachment to the host. It assembles from six wedges and a central hub. During infection the baseplate undergoes a large conformational change from a dome-shaped to a flat, star-shaped structure. We report the crystal structure of the C-terminal half of gene product (gp) 6 and investigate its motion with respect to the other proteins during the baseplate rearrangement. Six gp6 dimers interdigitate, forming a ring that maintains the integrity of the baseplate in both conformations. One baseplate wedge contains an N-terminal dimer of gp6, whereas neighboring wedges are tied together through the C-terminal dimer of gp6. The dimeric interactions are preserved throughout the rearrangement of the baseplate. However, the hinge angle between the N- and C-terminal parts of gp6 changes by approximately 15 degrees , accounting for a 10 A radial increase in the diameter of the gp6 ring.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, 915 W. State Street, West Lafayette, IN 47907-2054, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baseplate structural protein Gp6
A, B
335Tequatrovirus T4Mutation(s): 0 
Gene Names: 6gene 6
UniProt
Find proteins for P19060 (Enterobacteria phage T4)
Explore P19060 
Go to UniProtKB:  P19060
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19060
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.234 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.774α = 90
b = 94.579β = 90
c = 136.221γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SHELXCDphasing
SHELXEmodel building
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2013-02-20
    Changes: Other
  • Version 1.3: 2017-11-01
    Changes: Refinement description
  • Version 1.4: 2024-02-21
    Changes: Data collection, Database references