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Structure of a sliding clamp on DNA
DOI:10.2210/pdb3bep/pdb   NDB ID: PD1054
3BEP
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transferase , Transcription/dna
    Structure Weight: 89039.11
    Molecule: DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3')
    Polymer: 1 Type: dna Length: 10
    Chains: C
    Details: DNA labeled at 5' end by dye CY5 (labeled as residue name 5CY). Only half of dye is visible in density
    Molecule: DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3')
    Polymer: 2 Type: dna Length: 14
    Chains: D
    Molecule: DNA polymerase III subunit beta
    Polymer: 3 Type: protein Length: 366
    Chains: A, B
    EC#: 2.7.7.7   
    Organism Escherichia coli
    Gene Names dnaN b3701 JW3678
    UniProtKB:   Protein Feature View | Search PDB | P0A988  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli bl21  
     
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    Identifier Details
    2POL  Three-dimensional structure of the beta subunit of Escherichia coli DNA polymerase III holoenzyme 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    5CY
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    Download      		5CY C31 H39 N2 O2
    1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3- hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H- indol-2-ylidene]penta-1,3-dien-1-yl}-3,3- dimethyl-3H-indolium
    		5CY:3BEP
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD1054
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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