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Bovine cytochrome bc1 complex with stigmatellin bound
 
 
DOI:10.2210/pdb2a06/pdb
2A06
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 489391.72
     
    Molecule:Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial
    Polymer:1Type:polypeptide(L)Length:446
    Chains:A, N
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial
    Polymer:2Type:polypeptide(L)Length:439
    Chains:B, O
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Cytochrome b, heme protein, mitochondrial
    Polymer:3Type:polypeptide(L)Length:379
    Chains:C, P
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Cytochrome c1, heme protein, mitochondrial
    Polymer:4Type:polypeptide(L)Length:241
    Chains:D, Q
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Polymer:5Type:polypeptide(L)Length:196
    Chains:E, R
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase complex 14 kDa protein
    Polymer:6Type:polypeptide(L)Length:110
    Chains:F, S
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C
    Polymer:7Type:polypeptide(L)Length:81
    Chains:G, T
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase complex 11 kDa protein
    Polymer:8Type:polypeptide(L)Length:78
    Chains:H, U
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Polymer:9Type:polypeptide(L)Length:78
    Chains:I, V
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Molecule:Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
    Polymer:10Type:polypeptide(L)Length:62
    Chains:J, W
    EC#:1.10.2.2 Go to IUBMB EC entry  
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 2
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 3
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 4
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 5
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 6
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 7
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 8
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 9
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
    Polymer: 10
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Cattle  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1PP9  Structure from non-isomorphous crystal of the same form. 
    1PPJ  Structure with antimycin and stigmatellin bound, crystal isomorphous with that used here. 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    AZI     AZIDE ION N3 3DLigand Explorer Link out to Ligand Expos:AZI Link out to SuperLigands:AZI Link out to SuperHapten:AZI
    BHG     2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN- 3,4,5-TRIOL C12 H24 O6 3DLigand Explorer Link out to Ligand Expos:BHG Link out to SuperLigands:BHG Link out to SuperHapten:BHG
    CDL     CARDIOLIPIN C81 H156 O17 P2 3DLigand Explorer Link out to Ligand Expos:CDL Link out to SuperLigands:CDL Link out to SuperHapten:CDL
    FES     FE2/S2 (INORGANIC) CLUSTER Fe2 S2 3DLigand Explorer Link out to Ligand Expos:FES Link out to SuperLigands:FES Link out to SuperHapten:FES
    GOL     GLYCEROL C3 H8 O3 3DLigand Explorer Link out to Ligand Expos:GOL Link out to SuperLigands:GOL Link out to SuperHapten:GOL
    HEC     HEME C C34 H34 Fe N4 O4 3DLigand Explorer Link out to Ligand Expos:HEC Link out to SuperLigands:HEC Link out to SuperHapten:HEC
    HEM     PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 3DLigand Explorer Link out to Ligand Expos:HEM Link out to SuperLigands:HEM Link out to SuperHapten:HEM
    PEE     PHOSPHATIDYLETHANOLAMINE C41 H83 N O8 P 3DLigand Explorer Link out to Ligand Expos:PEE Link out to SuperLigands:PEE Link out to SuperHapten:PEE
    PO4     PHOSPHATE ION O4 P 3DLigand Explorer Link out to Ligand Expos:PO4 Link out to SuperLigands:PO4 Link out to SuperHapten:PO4
    SMA     STIGMATELLIN A C30 H42 O7 3DLigand Explorer Link out to Ligand Expos:SMA Link out to SuperLigands:SMA Link out to SuperHapten:SMA
    UNL     Unknown ligand n/a 3DLigand Explorer Link out to Ligand Expos:UNL Link out to SuperLigands:UNL Link out to SuperHapten:UNL
    UQ     UBIQUINONE-10 C59 H90 O4 3DLigand Explorer Link out to Ligand Expos:UQ Link out to SuperLigands:UQ Link out to SuperHapten:UQ
     
     
  •  
    Move Section Derived Data Hide
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Huang, L.S.,   Cobessi, D.,   Tung, E.Y.,   Berry, E.A.

    Deposition:   2005-06-16
    Release:   2005-06-21
    Last Modified (REVDAT):   2009-12-22
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.10
    R-Value: 0.224 (obs.)
    R-Free: 0.258
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 128.25 α = 90.00 
    b = 168.80 β = 90.00 
    c = 230.82 γ = 90.00