CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME DOI:10.2210/pdb2wwb/pdb   NDB ID: 2WWB EMDataBank  :1651, 1652, 1667, 1668, 1669

2WWB   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 258759.67 Molecule: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1 Polymer: 1 Type: protein Length: 476 Chains: A Organism Canis lupus familiaris Gene Name SEC61A1 UniProtKB:   Protein Feature View | Search PDB | P38377     Molecule: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA Polymer: 2 Type: protein Length: 68 Chains: B Organism Canis lupus familiaris Gene Name SEC61G UniProtKB:   Protein Feature View | Search PDB | P60058     Molecule: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA Polymer: 3 Type: protein Length: 96 Chains: C Organism Canis lupus familiaris Gene Name SEC61B UniProtKB:   Protein Feature View | Search PDB | P60467     Molecule: 5.8S RRNA Polymer: 4 Type: rna Length: 63 Chains: D Details: H5_H6_H7 FRAGMENT Organism Triticum aestivum Molecule: 25S RRNA Polymer: 5 Type: rna Length: 34 Chains: E Details: H24 FRAGMENT Organism Triticum aestivum Molecule: 25S RRNA Polymer: 6 Type: rna Length: 25 Chains: F Details: H50 FRAGMENT Organism Triticum aestivum Molecule: 25S RRNA Polymer: 7 Type: rna Length: 14 Chains: G Details: H59 FRAGMENT Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L4-B Polymer: 8 Type: protein Length: 362 Chains: H Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L17-A Polymer: 9 Type: protein Length: 184 Chains: I Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L19 Polymer: 10 Type: protein Length: 189 Chains: J Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L25 Polymer: 11 Type: protein Length: 142 Chains: K Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L26-A Polymer: 12 Type: protein Length: 127 Chains: L Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L31-A Polymer: 13 Type: protein Length: 113 Chains: M Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L35 Polymer: 14 Type: protein Length: 120 Chains: N Organism Triticum aestivum Molecule: 60S RIBOSOMAL PROTEIN L39 Polymer: 15 Type: protein Length: 51 Chains: O Organism Triticum aestivum     Source Hide Polymer: 1 Scientific Name: Canis lupus familiaris   Taxonomy   Common Name: Dog   Polymer: 2 Scientific Name: Canis lupus familiaris   Taxonomy   Common Name: Dog   Polymer: 3 Scientific Name: Canis lupus familiaris   Taxonomy   Common Name: Dog   Polymer: 4 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 5 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 6 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 7 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 8 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 9 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 10 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 11 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 12 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 13 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 14 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat   Polymer: 15 Scientific Name: Triticum aestivum   Taxonomy   Common Name: Bread wheat       Related PDB Entries Hide Identifier Details 1K5Y  STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEINCOMPONENTS INTO A 15A CRYO-EM MAP. THIS FILE 1K5Y CONTAINSTHE 60S RIBOSOMAL SUBUNIT. THE FILE 1K5X CONTAINS THE 40SRIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE MRNACODON.  1S1I  STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROMYEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA ANDPROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE,1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT ISIN FILE 1S1H.  2WWA  CRYO-EM STRUCTURES OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME      External Domain Annotations Hide Pfam Classification: 12 Domains - data from Pfam   GO Terms: 32 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: 2WWB   Electron Microscopy Database Hide EMDataBank  :  1651  1652  1667  1668  1669     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Becker, T.,  Mandon, E.,  Bhushan, S.,  Jarasch, A.,  Armache, J.P.,  Funes, S.,  Jossinet, F.,  Gumbart, J.,  Mielke, T.,  Berninghausen, O.,  Schulten, K.,  Westhof, E.,  Gilmore, R.,  Beckmann, R. Deposition:   2009-10-22 Release:   2009-12-08 Last Modified (REVDAT):   2011-07-20     Revision History    Hide Mouse over text for details 2011-07-20 Source and taxonomy 2011-07-20 Entry title 2011-07-20 Other 2011-07-20 Polymer description 2011-07-20 Refinement description 2011-07-20 Biological assembly 2011-07-20 Citation 2011-07-20 Entry authorship     Experimental Details Hide Method:   ELECTRON MICROSCOPY Exp. Data: EM Resolution [Å]: 6.48 Aggregation State: PARTICLE Symmetry Type: MIXED SYMMETRY Reconstruction Method: SINGLE PARTICLE Specimen Type: VITREOUS ICE (CRYO EM)     Molecule of the Month Hide Ribosomal Subunits Ribosome Ricin