2W2H

Structural basis of transcription activation by the Cyclin T1-Tat-TAR RNA complex from EIAV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.245 

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This is version 1.3 of the entry. See complete history


Literature

Structural Insights Into the Cyclin T1-Tat-Tar RNA Transcription Activation Complex from Eiav.

Anand, K.Schulte, A.Vogel-Bachmayr, K.Scheffzek, K.Geyer, M.

(2008) Nat Struct Mol Biol 15: 1287

  • DOI: https://doi.org/10.1038/nsmb.1513
  • Primary Citation of Related Structures:  
    2W2H

  • PubMed Abstract: 

    The replication of many retroviruses is mediated by a transcriptional activator protein, Tat, which activates RNA polymerase II at the level of transcription elongation. Tat interacts with Cyclin T1 of the positive transcription-elongation factor P-TEFb to recruit the transactivation-response TAR RNA, which acts as a promoter element in the transcribed 5' end of the viral long terminal repeat. Here we present the structure of the cyclin box domain of Cyclin T1 in complex with the Tat protein from the equine infectious anemia virus and its corresponding TAR RNA. The basic RNA-recognition motif of Tat adopts a helical structure whose flanking regions interact with a cyclin T-specific loop in the first cyclin box repeat. Together, both proteins coordinate the stem-loop structure of TAR. Our findings show that Tat binds to a surface on Cyclin T1 similar to where recognition motifs from substrate and inhibitor peptides were previously found to interact within Cdk-cyclin pairs.


  • Organizational Affiliation

    Max-Planck-Institut für molekulare Physiologie, Abteilung Physikalische Biochemie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CYCLIN-T1
A, B
264Equus caballusMutation(s): 0 
UniProt
Find proteins for Q9XT26 (Equus caballus)
Explore Q9XT26 
Go to UniProtKB:  Q9XT26
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9XT26
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN TAT
C, D
29Equine infectious anemia virusMutation(s): 0 
UniProt
Find proteins for P20920 (Equine infectious anemia virus (strain Wyoming))
Explore P20920 
Go to UniProtKB:  P20920
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20920
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
5'-R(*GP*CP*UP*CP*AP*GP*AP*UP*CP*UP *GP*CP*GP*GP*UP*CP*UP*GP*AP*GP*C)-3'E [auth R],
F [auth S]
22Equine infectious anemia virus
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.245 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 149.46α = 90
b = 149.46β = 90
c = 129.75γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-12-09
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-12-13
    Changes: Data collection, Database references, Other, Refinement description