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STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE 1.
DOI:10.2210/pdb2v47/pdb   NDB ID: 2V47
2V47
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2V46   2V47   2V48   2V49  
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Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1362713.24
    Molecule: 50S RIBOSOMAL PROTEIN L27
    Polymer: 1 Type: protein Length: 85
    Chains: 0
    Organism Thermus thermophilus HB8
    Gene Names rpmA TTHA1782
    UniProtKB:   Protein Feature View | Search PDB | P60493  
    Molecule: 50S RIBOSOMAL PROTEIN L28
    Polymer: 2 Type: protein Length: 98
    Chains: 1
    Organism Thermus thermophilus HB8
    Gene Names rpmB TTHA0042
    UniProtKB:   Protein Feature View | Search PDB | P60494  
    Molecule: 50S RIBOSOMAL PROTEIN L29
    Polymer: 3 Type: protein Length: 72
    Chains: 2
    Organism Thermus thermophilus HB8
    Gene Names rpmC TTHA1684
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP6  
    Molecule: 50S RIBOSOMAL PROTEIN L30
    Polymer: 4 Type: protein Length: 60
    Chains: 3
    Organism Thermus thermophilus HB8
    Gene Names rpmD TTHA1674
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ6  
    Molecule: 50S RIBOSOMAL PROTEIN L31
    Polymer: 5 Type: protein Length: 71
    Chains: 4
    Organism Thermus thermophilus HB8
    Gene Names rpmE TTHA1073
    UniProtKB:   Protein Feature View | Search PDB | Q5SJE1  
    Molecule: 50S RIBOSOMAL PROTEIN L32
    Polymer: 6 Type: protein Length: 60
    Chains: 5
    Organism Thermus thermophilus HB8
    Gene Names rpmF rpl32 TTHA0418
    UniProtKB:   Protein Feature View | Search PDB | P80339  
    Molecule: 50S RIBOSOMAL PROTEIN L33
    Polymer: 7 Type: protein Length: 54
    Chains: 6
    Organism Thermus thermophilus HB8
    Gene Names rpmG rpl33 TTHA0250
    UniProtKB:   Protein Feature View | Search PDB | P35871  
    Molecule: 50S RIBOSOMAL PROTEIN L34
    Polymer: 8 Type: protein Length: 49
    Chains: 7
    Organism Thermus thermophilus HB8
    Gene Names rpmH rpl34 TTHA0446
    UniProtKB:   Protein Feature View | Search PDB | P80340  
    Molecule: 50S RIBOSOMAL PROTEIN L35
    Polymer: 9 Type: protein Length: 65
    Chains: 8
    Organism Thermus thermophilus HB8
    Gene Names rpmI rpl35
    UniProtKB:   Protein Feature View | Search PDB | P80341  
    Molecule: 23S RIBOSOMAL RNA
    Polymer: 10 Type: rna Length: 2782
    Chains: A
    Details: CHAIN A (23S RNA) HAS E.COLI RESIDUE NUMBERING, BASED ON A STRUCTURAL ALIGNMENT WITH THE CORRESPONDING E. COLI STRUCTURE IN 2AW4
    Organism Thermus thermophilus HB8
    Molecule: 5S RIBOSOMAL RNA
    Polymer: 11 Type: rna Length: 122
    Chains: B
    Organism Thermus thermophilus HB8
    Molecule: 50S RIBOSOMAL PROTEIN L1
    Polymer: 12 Type: protein Length: 229
    Chains: C
    Organism Thermus thermophilus HB8
    Gene Names rplA TTHA0246
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP7  
    Molecule: 50S RIBOSOMAL PROTEIN L2
    Polymer: 13 Type: protein Length: 276
    Chains: D
    Organism Thermus thermophilus HB8
    Gene Names rplB TTHA1689
    UniProtKB:   Protein Feature View | Search PDB | P60405  
    Molecule: 50S RIBOSOMAL PROTEIN L3
    Polymer: 14 Type: protein Length: 206
    Chains: E
    Organism Thermus thermophilus HB8
    Gene Names rplC TTHA1692
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN8  
    Molecule: 50S RIBOSOMAL PROTEIN L4
    Polymer: 15 Type: protein Length: 210
    Chains: F
    Organism Thermus thermophilus HB8
    Gene Names rplD TTHA1691
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN9  
    Molecule: 50S RIBOSOMAL PROTEIN L5
    Polymer: 16 Type: protein Length: 182
    Chains: G
    Organism Thermus thermophilus HB8
    Gene Names rplE TTHA1680
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ0  
    Molecule: 50S RIBOSOMAL PROTEIN L6
    Polymer: 17 Type: protein Length: 180
    Chains: H
    Organism Thermus thermophilus HB8
    Gene Names rplF TTHA1677
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ3  
    Molecule: 50S RIBOSOMAL PROTEIN L9
    Polymer: 18 Type: protein Length: 148
    Chains: I
    Organism Thermus thermophilus HB8
    Gene Names rplI TTHA0242
    UniProtKB:   Protein Feature View | Search PDB | Q5SLQ1  
    Molecule: 50S RIBOSOMAL PROTEIN L13
    Polymer: 19 Type: protein Length: 140
    Chains: N
    Organism Thermus thermophilus HB8
    Gene Names rplM TTHA1465
    UniProtKB:   Protein Feature View | Search PDB | P60488  
    Molecule: 50S RIBOSOMAL PROTEIN L14
    Polymer: 20 Type: protein Length: 122
    Chains: O
    Organism Thermus thermophilus HB8
    Gene Names rplN TTHA1682
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP8  
    Molecule: 50S RIBOSOMAL PROTEIN L15
    Polymer: 21 Type: protein Length: 150
    Chains: P
    Organism Thermus thermophilus HB8
    Gene Names rplO TTHA1673
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ7  
    Molecule: 50S RIBOSOMAL PROTEIN L16
    Polymer: 22 Type: protein Length: 141
    Chains: Q
    Organism Thermus thermophilus HB8
    Gene Names rplP TTHA1685
    UniProtKB:   Protein Feature View | Search PDB | P60489  
    Molecule: 50S RIBOSOMAL PROTEIN L17
    Polymer: 23 Type: protein Length: 118
    Chains: R
    Organism Thermus thermophilus HB8
    Gene Names rplQ rpl17 TTHA1663
    UniProtKB:   Protein Feature View | Search PDB | Q9Z9H5  
    Molecule: 50S RIBOSOMAL PROTEIN L18
    Polymer: 24 Type: protein Length: 112
    Chains: S
    Organism Thermus thermophilus HB8
    Gene Names rplR TTHA1676
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ4  
    Molecule: 50S RIBOSOMAL PROTEIN L19
    Polymer: 25 Type: protein Length: 146
    Chains: T
    Organism Thermus thermophilus HB8
    Gene Names rplS TTHA1031
    UniProtKB:   Protein Feature View | Search PDB | P60490  
    Molecule: 50S RIBOSOMAL PROTEIN L20
    Polymer: 26 Type: protein Length: 118
    Chains: U
    Organism Thermus thermophilus HB8
    Gene Names rplT TTHA0553
    UniProtKB:   Protein Feature View | Search PDB | P60491  
    Molecule: 50S RIBOSOMAL PROTEIN L21
    Polymer: 27 Type: protein Length: 101
    Chains: V
    Organism Thermus thermophilus HB8
    Gene Names rplU TTHA1783
    UniProtKB:   Protein Feature View | Search PDB | P60492  
    Molecule: 50S RIBOSOMAL PROTEIN L22
    Polymer: 28 Type: protein Length: 113
    Chains: W
    Organism Thermus thermophilus HB8
    Gene Names rplV TTHA1687
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S RIBOSOMAL PROTEIN L23
    Polymer: 29 Type: protein Length: 96
    Chains: X
    Organism Thermus thermophilus HB8
    Gene Names rplW TTHA1690
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP0  
    Molecule: 50S RIBOSOMAL PROTEIN L24
    Polymer: 30 Type: protein Length: 110
    Chains: Y
    Organism Thermus thermophilus HB8
    Gene Names rplX TTHA1681
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP9  
    Molecule: 50S RIBOSOMAL PROTEIN L25
    Polymer: 31 Type: protein Length: 206
    Chains: Z
    Organism Thermus thermophilus HB8
    Gene Names rplY rpl25 rptL5 TTHA1589
    UniProtKB:   Protein Feature View | Search PDB | Q5SHZ1  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1FJG  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN,AND PAROMOMYCIN 
    1GIX  CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THISFILE, 1GIX, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA,AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1I94  CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITHTETRACYCLINE, EDEINE AND IF3 
    1I95  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH EDEINE 
    1I96  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATIONFACTOR IF3 (C- TERMINAL DOMAIN) 
    1I97  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH TETRACYCLINE 
    1IBK  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN 
    1IBL  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATETRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE ANDWITH THE ANTIBIOTIC PAROMOMYCIN 
    1IBM  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATETRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE 
    1J5E  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT 
    1JGO  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1JGP  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1JGQ  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1L1U  TERNARY COMPLEX DOCKED IN THE DECODING SITE OF THE 30SRIBOSOMAL SUBUNIT 
    1N32  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITBOUND TO CODON AND NEAR- COGNATE TRANSFER RNA ANTICODONSTEM-LOOP MISMATCHED AT THE FIRST CODON POSITION AT THE ASITE WITH PAROMOMYCIN 
    1N33  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITBOUND TO CODON AND NEAR- COGNATE TRANSFER RNA ANTICODONSTEM-LOOP MISMATCHED AT THE SECOND CODON POSITION AT THE ASITE WITH PAROMOMYCIN 
    1N34  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN THE PRESENCE OF CODON AND CRYSTALLOGRAPHICALLYDISORDERED NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOPMISMATCHED AT THE FIRST CODON POSITION 
    1N36  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODONAND NEAR- COGNATE TRANSFER RNA ANTICODON STEM- LOOPMISMATCHED AT THE SECOND CODON POSITION 
    1PNS  CRYSTAL STRUCTURE OF A STREPTOMYCIN DEPENDENT RIBOSOME FROME. COLI, 30S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNS,CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNAMOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU 
    1PNX  CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI,30S SUBUNIT OF 70S RIBOSOME . THIS FILE, 1PNX, CONTAINSONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50SSUBUNIT IS IN THE PDB FILE 1PNY. 
    1XMO  CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITHAAG-MRNA IN THE DECODING CENTER 
    1XMQ  CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA- MRNA BOUND TO THEDECODING CENTER 
    1XNQ  STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX INTHE CONTEXT OF THE DECODING CENTER 
    1XNR  CRYSTAL STRUCTURE OF AN INOSINE-CYTOSINE WOBBLE BASE PAIRIN THE CONTEXT OF THE DECODING CENTER 
    1YL4  CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR ANDTRNAS. 30S SUBUNIT. THE COORDINATES FOR THE 50S SUBUNITARE IN THE PDB ENTRY 1YL3 
    2B64  30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS, MRNA ANDRELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLERIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINSONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF1 ANDIS DESCRIBED IN REMARK 400. 
    2B9M  30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.THIS FILE CONTAINS THE 30S RIBOSOMAL SUBUNIT, TRNAS, MRNAAND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THEWHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURECONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTORRF2 AND IS DESCRIBED IN REMARK 400. 
    2B9O  30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTALSTRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODONIN THE A-SITE. THIS FILE CONTAINS THE 30S SUBUNIT, TRNASAND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMALCOMPLEX WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400 
    2F4V  30S RIBOSOME + DESIGNER ANTIBIOTIC 
    2J00  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN 
    2J01  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN 
    2J02  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN 
    2J03  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN 
    2UU9  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUA  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUB  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUC  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UXB  CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. 
    2UXC  CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. 
    2V46  STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 1. 
    2V48  STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 2. 
    2V49  STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT OF MOLECULE 2. 
     
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    View the NDB ID associated with this structure: 2V47
     
 
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Composite of PDB entries (2V46 and 2V47)