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Crystal structure of the 5'-deoxynucleotidase YfbR mutant E72A complexed with Co(2+) and dAMP
2PAU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 46635.24
    Molecule: 5'-deoxynucleotidase YfbR
    Polymer: 1 Type: protein Length: 201
    Chains: A, B
    EC#: 3.1.3.89   
    Mutation: E72A
    Organism: Escherichia coli K-12
    Gene Names: yfbR b2291 JW2288
    UniProtKB: Protein Feature View | Search PDB | P76491  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2PAQ  Crystal structure of 5'-deoxynucleotidase YfbR 
    2PAR  Crystal structure of 5'-deoxynucleotidase YfbR mutant E72A complexed with Co(2+) and TMP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CO
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    CO Co
    COBALT (II) ION
    D5M
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    D5M C10 H14 N5 O6 P
    2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
    D5M:2PAU
    PEG
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    PEG C4 H10 O3
    DI(HYDROXYETHYL)ETHER
    PEG:2PAU
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zimmerman, M.D.,  Proudfoot, M.,  Yakunin, A.,  Minor, W.

    Deposition:   2007-03-27
    Release:   2008-03-04
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Biological assembly
    2011-07-13
    Source and taxonomy
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.196 (obs.)
    R-Free: 0.260
    Space Group: H 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 135.60 α = 90.00 
    b = 135.60 β = 90.00 
    c = 54.94 γ = 120.00