2KXM

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex

PDB DOI: https://doi.org/10.2210/pdb2KXM/pdb
NAKB: 2KXM

Classification: RNA/Antibiotic
Mutation(s): No

Deposited: 2010-05-10 Released: 2011-04-20
Deposition Author(s): Duchardt-Ferner, E., Weigand, J.E., Ohlenschlager, O., Schmidtke, S.R., Suess, B., Wohnert, J.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Highly modular structure and ligand binding by conformational capture in a minimalistic riboswitch.

Duchardt-Ferner, E., Weigand, J.E., Ohlenschlager, O., Schmidtke, S.R., Suess, B., Wohnert, J.

(2010) Angew Chem Int Ed Engl 49: 6216-6219

PubMed: 20632338 Search on PubMed
DOI: https://doi.org/10.1002/anie.201001339
Primary Citation of Related Structures:
2KXM

Organizational Affiliation

Institute for Molecular Biosciences, Center for Biomolecular Magnetic Resonance (BMRZ), Johann-Wolfgang-Goethe-University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt, Germany.

Macromolecule Content

Total Structure Weight: 9.01 kDa
Atom Count: 595
Modelled Residue Count: 27
Deposited Residue Count: 27
Unique nucleic acid chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
RNA (27-MER)	A	27	N/A
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
RIO Query on RIO Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	RIBOSTAMYCIN C₁₇ H₃₄ N₄ O₁₀ NSKGQURZWSPSBC-VVPCINPTSA-N		Interactions Focus chain B [auth A]