Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 30s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400. DOI:10.2210/pdb2i2p/pdb   NDB ID: RR0149

2I2P   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 2I2P   2I2T   2I2U   2I2V     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 796073.63 Molecule: 16S ribosomal RNA Polymer: 1 Type: rna Length: 1542 Chains: A Organism Escherichia coli Molecule: PHE TRNA (UNMODIFIED BASES) Polymer: 2 Type: rna Length: 17 Chains: W Molecule: MRNA Polymer: 3 Type: rna Length: 6 Chains: X Molecule: 30S ribosomal protein S2 Polymer: 4 Type: protein Length: 240 Chains: B Organism Escherichia coli Gene Names rpsB b0169 JW0164 UniProtKB:   Protein Feature View | Search PDB | P0A7V0     Molecule: 30S ribosomal protein S3 Polymer: 5 Type: protein Length: 232 Chains: C Organism Escherichia coli Gene Names rpsC b3314 JW3276 UniProtKB:   Protein Feature View | Search PDB | P0A7V3     Molecule: 30S ribosomal protein S4 Polymer: 6 Type: protein Length: 205 Chains: D Organism Escherichia coli Gene Names rpsD ramA b3296 JW3258 UniProtKB:   Protein Feature View | Search PDB | P0A7V8     Molecule: 30S ribosomal protein S5 Polymer: 7 Type: protein Length: 166 Chains: E Organism Escherichia coli Gene Names rpsE spc b3303 JW3265 UniProtKB:   Protein Feature View | Search PDB | P0A7W1     Molecule: 30S ribosomal protein S6 Polymer: 8 Type: protein Length: 135 Chains: F Organism Escherichia coli Gene Names rpsF b4200 JW4158 UniProtKB:   Protein Feature View | Search PDB | P02358     Molecule: 30S ribosomal protein S7 Polymer: 9 Type: protein Length: 178 Chains: G Organism Escherichia coli Gene Names rpsG b3341 JW3303 UniProtKB:   Protein Feature View | Search PDB | P02359     Molecule: 30S ribosomal protein S8 Polymer: 10 Type: protein Length: 129 Chains: H Organism Escherichia coli Gene Names rpsH b3306 JW3268 UniProtKB:   Protein Feature View | Search PDB | P0A7W7     Molecule: 30S ribosomal protein S9 Polymer: 11 Type: protein Length: 129 Chains: I Organism Escherichia coli Gene Names rpsI b3230 JW3199 UniProtKB:   Protein Feature View | Search PDB | P0A7X3     Molecule: 30S ribosomal protein S10 Polymer: 12 Type: protein Length: 103 Chains: J Organism Escherichia coli Gene Names rpsJ nusE b3321 JW3283 UniProtKB:   Protein Feature View | Search PDB | P0A7R5     Molecule: 30S ribosomal protein S11 Polymer: 13 Type: protein Length: 128 Chains: K Organism Escherichia coli Gene Names rpsK b3297 JW3259 UniProtKB:   Protein Feature View | Search PDB | P0A7R9     Molecule: 30S ribosomal protein S12 Polymer: 14 Type: protein Length: 123 Chains: L Organism Escherichia coli Gene Names rpsL strA b3342 JW3304 UniProtKB:   Protein Feature View | Search PDB | P0A7S3     Molecule: 30S ribosomal protein S13 Polymer: 15 Type: protein Length: 117 Chains: M Organism Escherichia coli Gene Names rpsM b3298 JW3260 UniProtKB:   Protein Feature View | Search PDB | P0A7S9     Molecule: 30S ribosomal protein S14 Polymer: 16 Type: protein Length: 100 Chains: N Organism Escherichia coli Gene Names rpsN b3307 JW3269 UniProtKB:   Protein Feature View | Search PDB | P0AG59     Molecule: 30S ribosomal protein S15 Polymer: 17 Type: protein Length: 88 Chains: O Organism Escherichia coli Gene Names rpsO Z4526 ECs4046 UniProtKB:   Protein Feature View | Search PDB | Q8X9M2     Molecule: 30S ribosomal protein S16 Polymer: 18 Type: protein Length: 82 Chains: P Organism Escherichia coli Gene Names rpsP b2609 JW2590 UniProtKB:   Protein Feature View | Search PDB | P0A7T3     Molecule: 30S ribosomal protein S17 Polymer: 19 Type: protein Length: 83 Chains: Q Organism Escherichia coli Gene Names rpsQ neaA b3311 JW3273 UniProtKB:   Protein Feature View | Search PDB | P0AG63     Molecule: 30S ribosomal protein S18 Polymer: 20 Type: protein Length: 74 Chains: R Organism Escherichia coli Gene Names rpsR b4202 JW4160 UniProtKB:   Protein Feature View | Search PDB | P0A7T7     Molecule: 30S ribosomal protein S19 Polymer: 21 Type: protein Length: 91 Chains: S Organism Escherichia coli Gene Names rpsS b3316 JW3278 UniProtKB:   Protein Feature View | Search PDB | P0A7U3     Molecule: 30S ribosomal protein S20 Polymer: 22 Type: protein Length: 86 Chains: T Organism Escherichia coli Gene Names rpsT b0023 JW0022 UniProtKB:   Protein Feature View | Search PDB | P0A7U7     Molecule: 30S ribosomal protein S21 Polymer: 23 Type: protein Length: 70 Chains: U Organism Escherichia coli Gene Names rpsU b3065 JW3037 UniProtKB:   Protein Feature View | Search PDB | P68679         Source Hide Polymer: 1 Scientific Name: Escherichia coli   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Escherichia coli   Taxonomy     Polymer: 5 Scientific Name: Escherichia coli   Taxonomy     Polymer: 6 Scientific Name: Escherichia coli   Taxonomy     Polymer: 7 Scientific Name: Escherichia coli   Taxonomy     Polymer: 8 Scientific Name: Escherichia coli   Taxonomy     Polymer: 9 Scientific Name: Escherichia coli   Taxonomy     Polymer: 10 Scientific Name: Escherichia coli   Taxonomy     Polymer: 11 Scientific Name: Escherichia coli   Taxonomy     Polymer: 12 Scientific Name: Escherichia coli   Taxonomy     Polymer: 13 Scientific Name: Escherichia coli   Taxonomy     Polymer: 14 Scientific Name: Escherichia coli   Taxonomy     Polymer: 15 Scientific Name: Escherichia coli   Taxonomy     Polymer: 16 Scientific Name: Escherichia coli   Taxonomy     Polymer: 17 Scientific Name: Escherichia coli   Taxonomy     Polymer: 18 Scientific Name: Escherichia coli   Taxonomy     Polymer: 19 Scientific Name: Escherichia coli   Taxonomy     Polymer: 20 Scientific Name: Escherichia coli   Taxonomy     Polymer: 21 Scientific Name: Escherichia coli   Taxonomy     Polymer: 22 Scientific Name: Escherichia coli   Taxonomy     Polymer: 23 Scientific Name: Escherichia coli   Taxonomy         Related PDB Entries Hide Identifier Details 2I2T  50s subunit of 70s ribosome one  2I2U  30s subunit of 70s ribosome two  2I2V  50s subunit of 70s ribosome two      Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 22 Domains - data from SCOP   CATH Classification v3.4.0: 17 Domains - data from CATH   Pfam Classification: 23 Domains - data from Pfam   GO Terms: 197 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0149     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (2I2P and 2I2T)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Berk, V.,  Zhang, W.,  Pai, R.D.,  Cate, J.H.D. Deposition:   2006-08-16 Release:   2006-10-24 Last Modified (REVDAT):   2009-04-28     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.22 R-Value: 0.287 (work) R-Free: 0.320 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 211.78 α = 90.00  b = 395.22 β = 90.00  c = 744.38 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA