2HO7
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
- PDB DOI: https://doi.org/10.2210/pdb2HO7/pdb
- NAKB: 2HO7
- Classification: RNA
- Mutation(s): No 
- Deposited: 2006-07-13 Released: 2006-09-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.239 
- R-Value Work: 0.208 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
glmS ribozyme substrate RNA | 27 | N/A | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
G6P Query on G6P | C [auth A] | 6-O-phosphono-alpha-D-glucopyranose C6 H13 O9 P NBSCHQHZLSJFNQ-DVKNGEFBSA-N | |||
MG Query on MG | D [auth B], E [auth B], F [auth B], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.239 
- R-Value Work: 0.208 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 181.443 | α = 90 |
b = 40.84 | β = 90 |
c = 72.097 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2006-09-26  Deposition Author(s): Klein, D.J., Ferre-D'Amare, A.R.
Revision History (Full details and data files)
- Version 1.0: 2006-09-26
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references, Structure summary