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Crystal structure of E. coli ClpP with a Peptide Chloromethyl Ketone Covalently Bound at the Active Site
 
 
DOI:10.2210/pdb2fzs/pdb
2FZS
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 311483.02
     
    Molecule:ATP-dependent Clp protease proteolytic subunit
    Polymer:1Type:polypeptide(L)Length:193
    Chains:A, B, C, D, E, F, G, H, I, J, K, L, M, N
    EC#:3.4.21.92 Go to IUBMB EC entry  
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry Expression System: Escherichia coli bl21(de3)  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1TG6  Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP 
    1TYF  Structure of ClpP at 2.3 Angstrom Resolution Suggests a Model for ATP-dependent Proteolysis 
    1Y7O  The structure of Streptococcus pneumoniae A153P ClpP 
    2CBY  Crystal Structure of the ATP-dependent Clp Protease Proteolytic Subunit 1 (ClpP1) from Mycobacterium tuberculosis 
    2F6I  Crystal structure of the ClpP protease catalytic domain from Plasmodium falciparum 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CMQ     N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,2S)-2-HYDROXY- 1-(4-HYDROXYBENZYL)PROPYL]-L
    -LEUCINAMIDE     		C24 H32 N2 O5 3DLigand Explorer Link out to Ligand Expos:CMQ Link out to SuperLigands:CMQ Link out to SuperHapten:CMQ
    GOL     GLYCEROL C3 H8 O3 3DLigand Explorer Link out to Ligand Expos:GOL Link out to SuperLigands:GOL Link out to SuperHapten:GOL
    PGE     TRIETHYLENE GLYCOL C6 H14 O4 3DLigand Explorer Link out to Ligand Expos:PGE Link out to SuperLigands:PGE Link out to SuperHapten:PGE
     
     
  •  
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Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Szyk, A.,   Maurizi, M.R.

    Deposition:   2006-02-10
    Release:   2006-05-23
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.90
    R-Value: 0.176 (obs.)
    R-Free: 0.233
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 190.70 α = 90.00 
    b = 101.00 β = 99.00 
    c = 155.40 γ = 90.00