Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrate DOI:10.2210/pdb2ea0/pdb   NDB ID: PD0968

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/dna Structure Weight: 37656.74 Molecule: 5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3' Polymer: 1 Type: dna Length: 12 Chains: B Molecule: 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' Polymer: 2 Type: dna Length: 12 Chains: C Molecule: Endonuclease VIII Polymer: 3 Type: protein Length: 262 Chains: A EC#: 3.2.2    4.2.99.18    Organism Escherichia coli Gene Names nei b0714 JW0704 UniProtKB:   Protein Feature View | Search PDB | P50465         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 2OPF    2OQ4        Ligand Chemical Component Hide Identifier Formula Name Interactions GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type PED Search  C5 H13 O6 P nonPolymer     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 14 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0968     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Golan, G.,  Zharov, D.O.,  Grollman, A.P.,  Shoham, G. Deposition:   2007-01-29 Release:   2008-02-26 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   1.40 R-Value: 0.156 (obs.) R-Free: 0.204 Space Group: P 43 2 2 Unit Cell:   Length [Å] Angles [°] a = 76.18 α = 90.00  b = 76.18 β = 90.00  c = 164.54 γ = 90.00