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YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C
 
 
DOI:10.2210/pdb1kyo/pdb
1KYO
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Oxidoreductase/electron Transport
    Structure Weight: 507205.61
     
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I
    Polymer:1Type:polypeptide(L)Length:430
    Chains:A, L
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 27-457
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2
    Polymer:2Type:polypeptide(L)Length:352
    Chains:B, M
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 17-368
    Molecule:CYTOCHROME B
    Polymer:3Type:polypeptide(L)Length:385
    Chains:C, N
    Molecule:CYTOCHROME C1, HEME PROTEIN
    Polymer:4Type:polypeptide(L)Length:248
    Chains:D, O
    Fragment:RESIDUES 62-309
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT
    Polymer:5Type:polypeptide(L)Length:185
    Chains:E, P
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 31-215
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN
    Polymer:6Type:polypeptide(L)Length:74
    Chains:F, Q
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 74-147
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
    Polymer:7Type:polypeptide(L)Length:126
    Chains:G, R
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 2-127
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C
    Polymer:8Type:polypeptide(L)Length:93
    Chains:H, S
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 2-94
    Molecule:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN
    Polymer:9Type:polypeptide(L)Length:57
    Chains:I, T
    EC#:1.10.2.2 Go to IUBMB EC entry  
    Fragment:RESIDUES 1-57
    Molecule:HEAVY CHAIN (VH) OF FV-FRAGMENT
    Polymer:10Type:polypeptide(L)Length:127
    Chains:J, U
    Fragment:RESIDUES 1-127
    Molecule:LIGHT CHAIN (VL) OF FV-FRAGMENT
    Polymer:11Type:polypeptide(L)Length:107
    Chains:K, V
    Fragment:RESIDUES 1-107
    Molecule:CYTOCHROME C, ISO-1
    Polymer:12Type:polypeptide(L)Length:108
    Chains:W
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Mus musculus Go to NCBI Taxonomy entry Common Name: House mouse Expression System: Escherichia coli  
    Polymer: 11
    Scientific Name: Mus musculus Go to NCBI Taxonomy entry Common Name: House mouse Expression System: Escherichia coli  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1EZV  Yeast cytochrome bc1 complex crystallized with an antibody Fv fragment 
    1KB9  Phospholipid-binding in the yeast cytochrome bc1 complex rystallized with an antibody Fv fragment 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    FES     FE2/S2 (INORGANIC) CLUSTER Fe2 S2 3DLigand Explorer Link out to Ligand Expos:FES Link out to SuperLigands:FES Link out to SuperHapten:FES
    HEM     PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 3DLigand Explorer Link out to Ligand Expos:HEM Link out to SuperLigands:HEM Link out to SuperHapten:HEM
    SMA     STIGMATELLIN A C30 H42 O7 3DLigand Explorer Link out to Ligand Expos:SMA Link out to SuperLigands:SMA Link out to SuperHapten:SMA
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    M3L N-TRIMETHYLLYSINE (parent: LYS)(type: lPeptideLinking) C9 H21 N2 O2 3D Ligand Explorer Link out to Ligand Expos:M3L Link out to SuperLigands:M3L Link out to SuperHapten:M3L 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Lange, C.,   Hunte, C.

    Deposition:   2002-02-05
    Release:   2002-03-06
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 2.97
    R-Value: 0.229 (work)
    R-Free: 0.268
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 147.22 α = 90.00 
    b = 165.53 β = 104.19 
    c = 195.89 γ = 90.00