CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION DOI:10.2210/pdb1ffk/pdb   NDB ID: RR0011

1FFK   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1404963.85 Molecule: 23S RRNA Polymer: 1 Type: rna Length: 2922 Chains: 0 Organism Haloarcula marismortui Molecule: 5S RRNA Polymer: 2 Type: rna Length: 122 Chains: 9 Organism Haloarcula marismortui Molecule: RIBOSOMAL PROTEIN L2 Polymer: 3 Type: protein Length: 239 Chains: A Organism Haloarcula marismortui Gene Names rpl2p rrnAC1608 UniProtKB:   Protein Feature View | Search PDB | P20276     Molecule: RIBOSOMAL PROTEIN L3 Polymer: 4 Type: protein Length: 337 Chains: B Mutation: GLU67 DELETION, TYR312 INSERTION Organism Haloarcula marismortui Gene Names rpl3p rpl3 rrnAC1611 UniProtKB:   Protein Feature View | Search PDB | P20279     Molecule: RIBOSOMAL PROTEIN L4 Polymer: 5 Type: protein Length: 246 Chains: C Organism Haloarcula marismortui Gene Names rpl4p rpl4 rrnAC1610 UniProtKB:   Protein Feature View | Search PDB | P12735     Molecule: RIBOSOMAL PROTEIN L5 Polymer: 6 Type: protein Length: 176 Chains: D Organism Haloarcula marismortui Gene Names rpl5p rrnAC1598 UniProtKB:   Protein Feature View | Search PDB | P14124     Molecule: RIBOSOMAL PROTEIN L7AE Polymer: 7 Type: protein Length: 119 Chains: E Organism Haloarcula marismortui Gene Names rpl7ae rrnAC0103 UniProtKB:   Protein Feature View | Search PDB | P12743     Molecule: RIBOSOMAL PROTEIN L10E Polymer: 8 Type: protein Length: 157 Chains: F Organism Haloarcula marismortui Gene Names rpl10e rrnAC2357 UniProtKB:   Protein Feature View | Search PDB | P60617     Molecule: RIBOSOMAL PROTEIN L13 Polymer: 9 Type: protein Length: 145 Chains: G Organism Haloarcula marismortui Gene Names rpl13p rrnAC0065 UniProtKB:   Protein Feature View | Search PDB | P29198     Molecule: RIBOSOMAL PROTEIN L14 Polymer: 10 Type: protein Length: 132 Chains: H Organism Haloarcula marismortui Gene Names rpl14p rrnAC1602 UniProtKB:   Protein Feature View | Search PDB | P22450     Molecule: RIBOSOMAL PROTEIN L15E Polymer: 11 Type: protein Length: 194 Chains: I Organism Haloarcula marismortui Gene Names rpl15e rrnAC2065 UniProtKB:   Protein Feature View | Search PDB | P60618     Molecule: RIBOSOMAL PROTEIN L15 Polymer: 12 Type: protein Length: 164 Chains: J Organism Haloarcula marismortui Gene Names rpl15p rrnAC1590 UniProtKB:   Protein Feature View | Search PDB | P12737     Molecule: RIBOSOMAL PROTEIN L18 Polymer: 13 Type: protein Length: 186 Chains: K Organism Haloarcula marismortui Gene Names rpl18p rrnAC1593 UniProtKB:   Protein Feature View | Search PDB | P14123     Molecule: RIBOSOMAL PROTEIN L18E Polymer: 14 Type: protein Length: 115 Chains: L Organism Haloarcula marismortui Gene Names rpl18e rrnAC0064 UniProtKB:   Protein Feature View | Search PDB | P12733     Molecule: RIBOSOMAL PROTEIN L19 Polymer: 15 Type: protein Length: 148 Chains: M Organism Haloarcula marismortui Gene Names rpl19e rrnAC1594 UniProtKB:   Protein Feature View | Search PDB | P14119     Molecule: RIBOSOMAL PROTEIN L21E Polymer: 16 Type: protein Length: 95 Chains: N Organism Haloarcula marismortui Gene Names rpl21e rrnAC0260 UniProtKB:   Protein Feature View | Search PDB | P12734     Molecule: RIBOSOMAL PROTEIN L22 Polymer: 17 Type: protein Length: 154 Chains: O Organism Haloarcula marismortui Gene Names rpl22p rrnAC1606 UniProtKB:   Protein Feature View | Search PDB | P10970     Molecule: RIBOSOMAL PROTEIN L23 Polymer: 18 Type: protein Length: 84 Chains: P Organism Haloarcula marismortui Gene Names rpl23p rrnAC1609 UniProtKB:   Protein Feature View | Search PDB | P12732     Molecule: RIBOSOMAL PROTEIN L24 Polymer: 19 Type: protein Length: 119 Chains: Q Organism Haloarcula marismortui Gene Names rpl24p rrnAC1601 UniProtKB:   Protein Feature View | Search PDB | P10972     Molecule: RIBOSOMAL PROTEIN L24E Polymer: 20 Type: protein Length: 66 Chains: R Organism Haloarcula marismortui Gene Names rpl24e rrnAC0104 UniProtKB:   Protein Feature View | Search PDB | P14116     Molecule: RIBOSOMAL PROTEIN L29 Polymer: 21 Type: protein Length: 70 Chains: S Organism Haloarcula marismortui Gene Names rpl29p rrnAC1604 UniProtKB:   Protein Feature View | Search PDB | P10971     Molecule: RIBOSOMAL PROTEIN L30 Polymer: 22 Type: protein Length: 154 Chains: T Organism Haloarcula marismortui Gene Names rpl30p rrnAC1591 UniProtKB:   Protein Feature View | Search PDB | P14121     Molecule: RIBOSOMAL PROTEIN L31E Polymer: 23 Type: protein Length: 91 Chains: U Organism Haloarcula marismortui Gene Names rpl31e rrnAC3113 UniProtKB:   Protein Feature View | Search PDB | P18138     Molecule: RIBOSOMAL PROTEIN L32E Polymer: 24 Type: protein Length: 143 Chains: V Organism Haloarcula marismortui Gene Names rpl32e rrnAC1595 UniProtKB:   Protein Feature View | Search PDB | P12736     Molecule: RIBOSOMAL PROTEIN L37AE Polymer: 25 Type: protein Length: 73 Chains: W Organism Haloarcula marismortui Gene Names rpl37ae rrnAC1669 UniProtKB:   Protein Feature View | Search PDB | P60619     Molecule: RIBOSOMAL PROTEIN L37E Polymer: 26 Type: protein Length: 56 Chains: X Organism Haloarcula marismortui Gene Names rpl37e rrnAC0797.1 UniProtKB:   Protein Feature View | Search PDB | P32410     Molecule: RIBOSOMAL PROTEIN L39E Polymer: 27 Type: protein Length: 49 Chains: Y Organism Haloarcula marismortui Gene Names rpl39e rrnAC3112 UniProtKB:   Protein Feature View | Search PDB | P22452     Molecule: RIBOSOMAL PROTEIN L44E Polymer: 28 Type: protein Length: 92 Chains: Z Organism Haloarcula marismortui Gene Names rpl44e rrnAC3514 UniProtKB:   Protein Feature View | Search PDB | P32411     Molecule: RIBOSOMAL PROTEIN L6 Polymer: 29 Type: protein Length: 177 Chains: 1 Organism Haloarcula marismortui Gene Names rpl6p rrnAC1596 UniProtKB:   Protein Feature View | Search PDB | P14135         Source Hide Polymer: 1 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 2 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 3 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 4 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 5 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 6 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 7 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 8 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 9 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 10 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 11 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 12 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 13 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 14 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 15 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 16 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 17 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 18 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 19 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 20 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 21 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 22 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 23 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 24 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 25 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 26 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 27 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 28 Scientific Name: Haloarcula marismortui   Taxonomy     Polymer: 29 Scientific Name: Haloarcula marismortui   Taxonomy         Related PDB Entries Hide Identifier Details 1c04  Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit      Ligand Chemical Component Hide Identifier Formula Name Interactions CD Search  Download  Cd CADMIUM ION   Ligand Explorer K Search  Download  K POTASSIUM ION   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 29 Domains - data from SCOP   Pfam Classification: 31 Domains - data from Pfam   GO Terms: 207 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0011     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ban, N.,  Nissen, P.,  Hansen, J.,  Moore, P.B.,  Steitz, T.A. Deposition:   2000-07-25 Release:   2000-08-14 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   2.40 R-Value: 0.252 (work) R-Free: 0.261 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 211.66 α = 90.00  b = 299.67 β = 90.00  c = 573.77 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Ricin