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Crystal Structure of Mouse Cytidine Deaminase Complexed with 3-Deazauridine
 
 
DOI:10.2210/pdb1zab/pdb
1ZAB
 
Primary Citation
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  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 65924.44
     
    Molecule:Cytidine deaminase
    Polymer:1Type:polypeptide(L)Length:146
    Chains:A, B, C, D
    EC#:3.5.4.5 Go to IUBMB EC entry  
     
     
  •  
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    Polymer: 1
    Scientific Name: Mus musculus Go to NCBI Taxonomy entry Common Name: House mouse Expression System: Escherichia coli  
     
     
  •  
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    Id Details
    2FR5  THE SAME PROTEIN COMPLEXED WITH TETRAHYDROURIDINE. 
    2FR6  THE SAME PROTEIN COMPLEXED WITH CYTIDINE. 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    SO4     SULFATE ION O4 S 3DLigand Explorer Link out to Ligand Expos:SO4 Link out to SuperLigands:SO4 Link out to SuperHapten:SO4
    URD     1-((2R,3R,4S,5R)-TETRAHYDRO-3,4-DIHYDROXY- 5-(HYDROXYMETHYL)FURAN-2-YL)PYRIDINE
    -2,4(1H,3H)- DIONE     		C10 H13 N O6 3DLigand Explorer Link out to Ligand Expos:URD Link out to SuperLigands:URD Link out to SuperHapten:URD
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    URD 1-((2R,3R,4S,5R)-TETRAHYDRO-3,4-DIHYDROXY-5-(HYDROXYMETHYL)FURAN-2-YL)PYRIDINE-2,4(1H,3H)-DIONE (parent: U)(type: rnaLinking) C10 H13 N O6 3D Ligand Explorer Link out to Ligand Expos:URD Link out to SuperLigands:URD Link out to SuperHapten:URD 2D
     
     
  •  
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Teh, A.H.

    Deposition:   2005-04-06
    Release:   2006-04-11
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.36
    R-Value: 0.178 (obs.)
    R-Free: 0.206
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 82.24 α = 90.00 
    b = 92.36 β = 90.00 
    c = 180.53 γ = 90.00