Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.     DOI:10.2210/pdb1yl3/pdb   NDB ID: RR0119

1YL3 Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 1YL3   1YL4   Download All Files          Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 1451043.40   Molecule: 5S ribosomal RNA Polymer: 1 Type: polyribonucleotide Length: 123 Chains: B Molecule: 23S ribosomal RNA Polymer: 2 Type: polyribonucleotide Length: 2915 Chains: A Molecule: 50S ribosomal protein L1 Polymer: 3 Type: polypeptide(L) Length: 228 Chains: C Molecule: 50S ribosomal protein L2 Polymer: 4 Type: polypeptide(L) Length: 178 Chains: D Molecule: 50S ribosomal protein L3 Polymer: 5 Type: polypeptide(L) Length: 338 Chains: E Molecule: 50S ribosomal protein L4 Polymer: 6 Type: polypeptide(L) Length: 246 Chains: F Molecule: 50S ribosomal protein L5 Polymer: 7 Type: polypeptide(L) Length: 176 Chains: G Molecule: 50S ribosomal protein L6 Polymer: 8 Type: polypeptide(L) Length: 177 Chains: H Molecule: 50S ribosomal protein L7/L12 Polymer: 9 Type: polypeptide(L) Length: 128 Chains: I, J Molecule: 50S ribosomal protein L9 Polymer: 10 Type: polypeptide(L) Length: 149 Chains: K Molecule: 50S ribosomal protein L11 Polymer: 11 Type: polypeptide(L) Length: 141 Chains: L Molecule: 50S ribosomal protein L13 Polymer: 12 Type: polypeptide(L) Length: 145 Chains: M Molecule: 50S ribosomal protein L14 Polymer: 13 Type: polypeptide(L) Length: 122 Chains: N Molecule: 50S ribosomal protein L15 Polymer: 14 Type: polypeptide(L) Length: 164 Chains: O Molecule: 50S ribosomal protein L16 Polymer: 15 Type: polypeptide(L) Length: 138 Chains: P Molecule: 50S ribosomal protein L18 Polymer: 16 Type: polypeptide(L) Length: 186 Chains: Q Molecule: 50S ribosomal protein L19 Polymer: 17 Type: polypeptide(L) Length: 66 Chains: R Molecule: 50S ribosomal protein L22 Polymer: 18 Type: polypeptide(L) Length: 113 Chains: S Molecule: 50S ribosomal protein L23 Polymer: 19 Type: polypeptide(L) Length: 84 Chains: T Molecule: 50S ribosomal protein L24 Polymer: 20 Type: polypeptide(L) Length: 119 Chains: U Molecule: 50S general stress protein CTC (L25) Polymer: 21 Type: polypeptide(L) Length: 253 Chains: V Molecule: 50S ribosomal protein L29 Polymer: 22 Type: polypeptide(L) Length: 70 Chains: W Molecule: 50S ribosomal protein L30 Polymer: 23 Type: polypeptide(L) Length: 60 Chains: X Molecule: 50S ribosomal protein L17 Polymer: 24 Type: polypeptide(L) Length: 118 Chains: 0 Molecule: 50S ribosomal protein L20 Polymer: 25 Type: polypeptide(L) Length: 118 Chains: 1 Molecule: 50S ribosomal protein L21 Polymer: 26 Type: polypeptide(L) Length: 100 Chains: 2 Molecule: 50S ribosomal protein L27 Polymer: 27 Type: polypeptide(L) Length: 91 Chains: 3 Molecule: 50S ribosomal protein L31 Polymer: 28 Type: polypeptide(L) Length: 73 Chains: 4 Molecule: 50S ribosomal protein L32 Polymer: 29 Type: polypeptide(L) Length: 60 Chains: 5 Molecule: 50S ribosomal protein L33 Polymer: 30 Type: polypeptide(L) Length: 82 Chains: 6 Molecule: 50S ribosomal protein L34 Polymer: 31 Type: polypeptide(L) Length: 47 Chains: 7 Molecule: 50S ribosomal protein L35 Polymer: 32 Type: polypeptide(L) Length: 64 Chains: 8 Molecule: 50S ribosomal protein L36 Polymer: 33 Type: polypeptide(L) Length: 36 Chains: 9       Source Hide Polymer: 1 Scientific Name: Thermus thermophilus hb8   Polymer: 2 Scientific Name: Thermus thermophilus hb8   Polymer: 3 Scientific Name: Thermus thermophilus hb8   Polymer: 4 Scientific Name: Thermus thermophilus hb8   Polymer: 5 Scientific Name: Thermus thermophilus hb8   Polymer: 6 Scientific Name: Thermus thermophilus hb8   Polymer: 7 Scientific Name: Thermus thermophilus hb8   Polymer: 8 Scientific Name: Thermus thermophilus hb8   Polymer: 9 Scientific Name: Thermus thermophilus hb8   Polymer: 10 Scientific Name: Thermus thermophilus hb8   Polymer: 11 Scientific Name: Thermus thermophilus hb8   Polymer: 12 Scientific Name: Thermus thermophilus hb8   Polymer: 13 Scientific Name: Thermus thermophilus hb8   Polymer: 14 Scientific Name: Thermus thermophilus hb8   Polymer: 15 Scientific Name: Thermus thermophilus hb8   Polymer: 16 Scientific Name: Thermus thermophilus hb8   Polymer: 17 Scientific Name: Thermus thermophilus hb8   Polymer: 18 Scientific Name: Thermus thermophilus hb8   Polymer: 19 Scientific Name: Thermus thermophilus hb8   Polymer: 20 Scientific Name: Thermus thermophilus hb8   Polymer: 21 Scientific Name: Thermus thermophilus hb8   Polymer: 22 Scientific Name: Thermus thermophilus hb8   Polymer: 23 Scientific Name: Thermus thermophilus hb8   Polymer: 24 Scientific Name: Thermus thermophilus hb8   Polymer: 25 Scientific Name: Thermus thermophilus hb8   Polymer: 26 Scientific Name: Thermus thermophilus hb8   Polymer: 27 Scientific Name: Thermus thermophilus hb8   Polymer: 28 Scientific Name: Thermus thermophilus hb8   Polymer: 29 Scientific Name: Thermus thermophilus hb8   Polymer: 30 Scientific Name: Thermus thermophilus hb8   Polymer: 31 Scientific Name: Thermus thermophilus hb8   Polymer: 32 Scientific Name: Thermus thermophilus hb8   Polymer: 33 Scientific Name: Thermus thermophilus hb8         Related PDB Entries Hide Id Details 1giy  The large subunit of 70S ribosome  1nkw  Structure of the large subunit of 70S ribosome from Deinococcus radiodurans  1YL4  The small subunit of the same structure, with mRNA and tRNAs        Derived Data Hide SCOP Classification v1.75 - (31 Domains) PFAM Classification - (36 Domains) GO Terms - (30 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Composite of PDB entries (1YL3 and 1YL4)         Deposition Summary Hide Authors:   Jenner, L.,   Romby, P.,   Rees, B.,   Schulze-Briese, C.,   Springer, M.,   Ehresmann, C.,   Ehresmann, B.,   Moras, D.,   Yusupova, G.,   Yusupov, M. Deposition:   2005-01-19 Release:   2005-04-12 Last Modified (REVDAT):   2009-04-21       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 5.50 R-Value: 0.309 (obs.) R-Free: 0.356 Space Group: I 4 2 2 Unit Cell:   Length [Å] Angles [°] a = 508.64 α = 90.00  b = 508.64 β = 90.00  c = 806.25 γ = 90.00        Structure Links Hide Molecule of the Month Features: Ribosome 70S Ribosomes