1SVA

SIMIAN VIRUS 40

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.257 

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This is version 1.3 of the entry. See complete history. 


Literature

The structure of simian virus 40 refined at 3.1 A resolution.

Stehle, T., Gamblin, S.J., Yan, Y., Harrison, S.C.

(1996) Structure 4: 165-182

  • DOI: https://doi.org/10.1016/s0969-2126(96)00020-2
  • Primary Citation of Related Structures:  
    1SVA

  • PubMed Abstract: 

    The structure of simian virus 40 (SV40), previously determined at 3.8 degree resolution, shows how its pentameric VP1 assembly units are tied together by extended C-terminal arms. In order to define more precisely the possible assembly mechanisms, we have refined the structure at 3.1 degree resolution.

    • Organizational Affiliation: 

    Howard Hughes Medical Institute and Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.


Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SIMIAN VIRUS 40361Betapolyomavirus macacaeMutation(s): 0 
UniProt
Find proteins for P03087 (Simian virus 40)
Explore P03087 
Go to UniProtKB:  P03087
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03087
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.257 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 558α = 90
b = 558β = 90
c = 558γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-06-10
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Data collection, Database references, Derived calculations, Other