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Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
 
 
DOI:10.2210/pdb1nkw/pdb   NDB ID: RR0067
1NKW
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1388104.51
     
    Molecule:23S ribosomal RNA
    Polymer:1Type:polyribonucleotideLength:2880
    Chains:0
    Molecule:5S ribosomal RNA
    Polymer:2Type:polyribonucleotideLength:124
    Chains:9
    Molecule:50S ribosomal protein L2
    Polymer:3Type:polypeptide(L)Length:275
    Chains:A
    Molecule:50S ribosomal protein L3
    Polymer:4Type:polypeptide(L)Length:211
    Chains:B
    Molecule:50S ribosomal protein L4
    Polymer:5Type:polypeptide(L)Length:205
    Chains:C
    Molecule:50S ribosomal protein L5
    Polymer:6Type:polypeptide(L)Length:180
    Chains:D
    Molecule:50S ribosomal protein L6
    Polymer:7Type:polypeptide(L)Length:212
    Chains:E
    Molecule:50S ribosomal protein L9
    Polymer:8Type:polypeptide(L)Length:146
    Chains:F
    Molecule:50S ribosomal protein L11
    Polymer:9Type:polypeptide(L)Length:144
    Chains:G
    Molecule:50S ribosomal protein L13
    Polymer:10Type:polypeptide(L)Length:174
    Chains:H
    Molecule:50S ribosomal protein L14
    Polymer:11Type:polypeptide(L)Length:134
    Chains:I
    Molecule:50S ribosomal protein L15
    Polymer:12Type:polypeptide(L)Length:156
    Chains:J
    Molecule:50S ribosomal protein L16
    Polymer:13Type:polypeptide(L)Length:142
    Chains:K
    Molecule:50S ribosomal protein L17
    Polymer:14Type:polypeptide(L)Length:116
    Chains:L
    Molecule:50S ribosomal protein L18
    Polymer:15Type:polypeptide(L)Length:114
    Chains:M
    Molecule:50S ribosomal protein L19
    Polymer:16Type:polypeptide(L)Length:166
    Chains:N
    Molecule:50S ribosomal protein L20
    Polymer:17Type:polypeptide(L)Length:118
    Chains:O
    Molecule:50S ribosomal protein L21
    Polymer:18Type:polypeptide(L)Length:100
    Chains:P
    Molecule:50S ribosomal protein L22
    Polymer:19Type:polypeptide(L)Length:134
    Chains:Q
    Molecule:50S ribosomal protein L23
    Polymer:20Type:polypeptide(L)Length:95
    Chains:R
    Molecule:50S ribosomal protein L24
    Polymer:21Type:polypeptide(L)Length:115
    Chains:S
    Molecule:general stress protein CTC
    Polymer:22Type:polypeptide(L)Length:253
    Chains:T
    Molecule:50S ribosomal protein L27
    Polymer:23Type:polypeptide(L)Length:91
    Chains:U
    Molecule:50S ribosomal protein L29
    Polymer:24Type:polypeptide(L)Length:67
    Chains:W
    Molecule:50S ribosomal protein L30
    Polymer:25Type:polypeptide(L)Length:55
    Chains:X
    Molecule:50S ribosomal protein L31
    Polymer:26Type:polypeptide(L)Length:73
    Chains:Y
    Molecule:50S ribosomal protein L32
    Polymer:27Type:polypeptide(L)Length:60
    Chains:Z
    Molecule:50S ribosomal protein L33
    Polymer:28Type:polypeptide(L)Length:82
    Chains:1
    Molecule:50S ribosomal protein L34
    Polymer:29Type:polypeptide(L)Length:47
    Chains:2
    Molecule:50S ribosomal protein L35
    Polymer:30Type:polypeptide(L)Length:64
    Chains:3
    Molecule:50S ribosomal protein L36
    Polymer:31Type:polypeptide(L)Length:36
    Chains:4
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 5
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 6
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 7
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 8
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 9
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 10
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 11
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 12
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 13
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 14
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 15
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 16
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 17
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 18
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 19
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 20
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 21
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 22
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 23
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 24
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 25
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 26
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 27
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 28
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 29
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 30
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
    Polymer: 31
    Scientific Name: Deinococcus radiodurans Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1JZX  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN 
    1JZY  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN 
    1JZZ  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ROXITHROMYCIN 
    1K00  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLARITHROMYCIN 
    1K01  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CHLORAMPHENICOL 
    1NJM  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM/SPARSOMYCIN 
    1NJN  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN 
    1NJO  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ACCP 
    1NJP  COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM 
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Harms, J.M.,   Schluenzen, F.,   Zarivach, R.,   Bashan, A.,   Gat, S.,   Agmon, I.,   Bartels, H.,   Franceschi, F.,   Yonath, A.

    Deposition:   2003-01-05
    Release:   2003-02-11
    Last Modified (REVDAT):   2009-02-24

    Previous versions: 1LNR
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 3.10
    R-Value: 0.240 (work)
    R-Free: 0.274
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 170.00 α = 90.00 
    b = 410.00 β = 90.00 
    c = 697.00 γ = 90.00