The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-D-glucose bound DOI:10.2210/pdb1ker/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Lyase Structure Weight: 80709.10 Molecule: dTDP-D-glucose 4,6-dehydratase Polymer: 1 Type: protein Length: 348 Chains: A, B EC#: 4.2.1.46    Organism Streptococcus suis Gene Names rmlB SSUST3_0688 UniProtKB:   Protein Feature View | Search PDB | Q8GIP9         Source Hide Polymer: 1 Scientific Name: Streptococcus suis   Taxonomy   Expression System: Escherichia coli bl21(de3)       Related PDB Entries Hide Identifier Details 1G1A  RmlB from Salmonella enterica serovar Typhimurium with NAD+ bound  1KEP  RmlB from Streptococcus suis with dTDP-xylose bound  1KET  RmlB from Streptococcus suis with thymidine diphosphate bound  1KEU  RmlB from Salmonella enterica serovar Typhimurium with dTDP-D-glucose bound  1KEW  RmlB from Salmonella enterica serovar Typhimurium with NAD+ bound      Ligand Chemical Component Hide Identifier Formula Name Interactions DAU Search  Download  C16 H26 N2 O16 P2 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE   Ligand Explorer NAD Search  Download  C21 H27 N7 O14 P2 NICOTINAMIDE-ADENINE-DINUCLEOTIDE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 4 Domains - data from Pfam   GO Terms: 3 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Allard, S.T.M.,  Beis, K.,  Giraud, M.-F.,  Hegeman, A.D.,  Gross, J.W.,  Whitfield, C.,  Graninger, M.,  Messner, P.,  Allen, A.G.,  Naismith, J.H. Deposition:   2001-11-17 Release:   2002-01-25 Last Modified (REVDAT):   2012-05-23     Revision History    Hide Mouse over text for details 2012-05-23 Atom nomenclature 2012-05-23 Refinement description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.20 R-Value: 0.175 (work) R-Free: 0.206 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 61.22 α = 90.00  b = 96.15 β = 90.00  c = 182.89 γ = 90.00