POP-OUT | CLOSE
COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
DOI:10.2210/pdb1aoi/pdb   NDB ID: PD0001
1AOI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 184549.15
    Molecule: PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA
    Polymer: 1 Type: dna Length: 146
    Chains: I, J
    Molecule: HISTONE H3
    Polymer: 2 Type: protein Length: 116
    Chains: A, E
    Fragment: HISTONE H3
    Organism Xenopus laevis
    Gene Name h3f3c
    UniProtKB:   Protein Feature View | Search PDB | P02302  
    Molecule: HISTONE H4
    Polymer: 3 Type: protein Length: 87
    Chains: B, F
    Fragment: HISTONE H4
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P62799  
    Molecule: HISTONE H2A
    Polymer: 4 Type: protein Length: 116
    Chains: C, G
    Fragment: HISTONE H2A
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P06897  
    Molecule: HISTONE H2B
    Polymer: 5 Type: protein Length: 99
    Chains: D, H
    Fragment: HISTONE H2B
    Mutation: A7P
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P02281  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
    Search 
    Download 
    MN Mn
    MANGANESE (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0001
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Luger, K.,  Maeder, A.W.,  Richmond, R.K.,  Sargent, D.F.,  Richmond, T.J.

    Deposition:   1997-07-03
    Release:   1998-09-30
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.80
    R-Value: 0.224 (work)
    R-Free: 0.302
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.04 α = 90.00 
    b = 181.78 β = 90.00 
    c = 110.12 γ = 90.00