GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5VYT designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5VYT_GDP_D_302 | 77% | 42% | 0.1 | 0.938 | 0.92 | 1.3 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5VYT_GDP_C_302 | 72% | 37% | 0.096 | 0.944 | 1.02 | 1.42 | 1 | 3 | 1 | 0 | 86% | 0.8571 |
| 5VYT_GDP_B_302 | 43% | 28% | 0.162 | 0.911 | 1.1 | 1.77 | 2 | 8 | 0 | 0 | 86% | 0.8571 |
| 5VYT_GDP_A_302 | 38% | 33% | 0.157 | 0.882 | 1.13 | 1.53 | 2 | 4 | 0 | 0 | 86% | 0.8571 |
| 5VYS_GDP_B_302 | 70% | 40% | 0.114 | 0.932 | 0.96 | 1.35 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5VYU_GDP_B_302 | 38% | 35% | 0.157 | 0.859 | 1.05 | 1.5 | 1 | 4 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
