TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 5TPV designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5TPV_TYD_B_201 | 78% | 30% | 0.101 | 0.944 | 0.98 | 1.78 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5TPV_TYD_A_201 | 60% | 30% | 0.118 | 0.903 | 0.98 | 1.77 | 1 | 3 | 1 | 0 | 100% | 1 |
| 5TPV_TYD_C_201 | 14% | 30% | 0.215 | 0.766 | 0.99 | 1.77 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 22% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 32% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 33% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 31% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_C_3006 | 98% | 8% | 0.057 | 0.978 | 1.68 | 2.93 | 5 | 3 | 0 | 0 | 100% | 1 |
