TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3G2X designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3G2X_TYD_B_201 | 86% | 32% | 0.104 | 0.974 | 1.01 | 1.8 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3G2X_TYD_A_201 | 71% | 32% | 0.131 | 0.951 | 1.11 | 1.71 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3G2X_TYD_C_201 | 68% | 35% | 0.137 | 0.95 | 0.91 | 1.74 | 1 | 1 | 1 | 0 | 100% | 1 |
| 3G2X_TYD_E_201 | 67% | 34% | 0.152 | 0.963 | 1 | 1.68 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3G2X_TYD_D_201 | 61% | 34% | 0.151 | 0.941 | 1.01 | 1.71 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3G2X_TYD_F_201 | 45% | 34% | 0.176 | 0.907 | 0.99 | 1.69 | 1 | 2 | 1 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 34% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 34% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3DDI_TYD_B_201 | 88% | 9% | 0.094 | 0.969 | 2.52 | 2.17 | 3 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 25% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 35% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_C_3006 | 98% | 9% | 0.057 | 0.978 | 1.68 | 2.93 | 5 | 3 | 0 | 0 | 100% | 1 |
| 5TPU_TYD_C_201 | 97% | 28% | 0.062 | 0.98 | 1.04 | 1.95 | 2 | 6 | 0 | 0 | 100% | 1 |
