TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3FBC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3FBC_TYD_D_138 | 28% | 34% | 0.245 | 0.897 | 1.09 | 1.63 | 1 | 3 | 1 | 0 | 100% | 1 |
| 3FBC_TYD_A_138 | 26% | 36% | 0.236 | 0.88 | 0.98 | 1.63 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3FBC_TYD_C_138 | 21% | 33% | 0.32 | 0.929 | 1.05 | 1.68 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3FBC_TYD_F_138 | 14% | 34% | 0.325 | 0.883 | 1.04 | 1.68 | 1 | 2 | 1 | 0 | 100% | 1 |
| 3FBC_TYD_B_138 | 9% | 34% | 0.365 | 0.853 | 1.05 | 1.67 | 1 | 3 | 1 | 0 | 100% | 1 |
| 3FBC_TYD_E_138 | 5% | 35% | 0.42 | 0.841 | 1.02 | 1.61 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3FBF_TYD_A_138 | 83% | 34% | 0.11 | 0.97 | 0.99 | 1.72 | 1 | 3 | 3 | 0 | 100% | 1 |
| 3EVW_TYD_D_138 | 76% | 32% | 0.13 | 0.967 | 0.97 | 1.81 | 1 | 6 | 1 | 0 | 100% | 1 |
| 2B8Q_TYD_C_162 | 67% | 25% | 0.147 | 0.956 | 1.26 | 1.94 | 1 | 7 | 2 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 25% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 34% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 35% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 34% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_C_3006 | 98% | 9% | 0.057 | 0.978 | 1.68 | 2.93 | 5 | 3 | 0 | 0 | 100% | 1 |
