XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 2CDC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2CDC_XYS_D_1371 | 82% | 48% | 0.1 | 0.954 | 1.01 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
| 2CDC_XYS_C_1370 | 67% | 41% | 0.093 | 0.9 | 1.18 | 1.18 | 1 | 1 | 0 | 0 | 100% | 1 |
| 2CDC_XYS_A_1368 | 63% | 44% | 0.152 | 0.948 | 1.15 | 1.06 | 1 | - | 1 | 0 | 100% | 0.5 |
| 2CDC_XYS_A_1370 | 62% | 45% | 0.116 | 0.908 | 0.86 | 1.3 | - | 1 | 0 | 0 | 100% | 1 |
| 2CDC_XYS_B_1370 | 59% | 42% | 0.129 | 0.912 | 1.26 | 1.03 | 1 | 1 | 0 | 0 | 100% | 1 |
| 2CDC_XYS_D_1369 | 43% | 48% | 0.18 | 0.903 | 1.17 | 0.84 | 1 | - | 0 | 0 | 100% | 0.5 |
| 5A03_XYS_B_1342 | 92% | 35% | 0.063 | 0.953 | 1.68 | 1.01 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 91% | 61% | 0.064 | 0.967 | 0.83 | 0.66 | - | - | 0 | 0 | 90% | 0.9 |
| 8BQA_XYS_AAA_402 | 88% | 36% | 0.058 | 0.951 | 0.83 | 1.77 | - | 3 | 0 | 0 | 90% | 0.9 |
| 7PLC_XYS_C_302 | 85% | 62% | 0.096 | 0.961 | 0.55 | 0.87 | - | 1 | 1 | 0 | 100% | 1 |
| 1MN0_XYS_B_348 | 79% | 35% | 0.096 | 0.943 | 0.89 | 1.75 | - | 4 | 0 | 0 | 100% | 1 |
