7ASU

Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2773.2 M NaCl, 100 mM Sodium Acetate pH 4.6 and 10 mM ZnCl2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.3α = 90
b = 56.3β = 90
c = 275.88γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2014-11-19MSINGLE WAVELENGTH
21x-ray100PIXELDECTRIS PILATUS3 6M2015-02-13MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9198DiamondI04
2SYNCHROTRONDIAMOND BEAMLINE I030.97965, 0.97980, 0.971970DiamondI03

Serial Crystallography

Sample delivery method
Diffraction IDDescriptionSample Delivery Method
2fixed target

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2348.011000.0526.927.413725
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.232.310.749

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMADFREE R-VALUE2.2345.97137251000.180.2250.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d16.0104
f_angle_d0.8413
f_chiral_restr0.053
f_bond_d0.0078
f_plane_restr0.0047
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1354
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms4

Software

Software
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHENIXphasing