6S3F

Moringa seed protein Mo-CBP3-4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP52930.1M citic acid 2.4M sodium formate
Crystal Properties
Matthews coefficientSolvent content
358.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.07α = 90
b = 108.07β = 90
c = 43.62γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2013-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.99ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6854.4599.60.0350.0224.77.11515627.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.681.7195.50.6910.4112.87.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.6819.371355772094.90.183920.181470.23093RANDOM39.791
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.06-0.060.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.356
r_dihedral_angle_4_deg22.332
r_dihedral_angle_3_deg14.776
r_long_range_B_refined13.074
r_long_range_B_other13.06
r_scangle_other9.713
r_dihedral_angle_1_deg6.536
r_mcangle_other6.393
r_mcangle_it6.39
r_scbond_it6.198
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.356
r_dihedral_angle_4_deg22.332
r_dihedral_angle_3_deg14.776
r_long_range_B_refined13.074
r_long_range_B_other13.06
r_scangle_other9.713
r_dihedral_angle_1_deg6.536
r_mcangle_other6.393
r_mcangle_it6.39
r_scbond_it6.198
r_scbond_other6.155
r_mcbond_it4.479
r_mcbond_other4.473
r_angle_refined_deg2.306
r_angle_other_deg1.186
r_chiral_restr0.141
r_bond_refined_d0.027
r_gen_planes_refined0.012
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms736
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDEphasing