X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529824-28% PEG1000, 100 mM TrisHCl, 5 mM MgCl2
Crystal Properties
Matthews coefficientSolvent content
2.2848.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.748α = 90
b = 57.072β = 107.6
c = 113.443γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 702014-02-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5400

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.335098.29.517.87.156787133.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.332.4185.90.9840.6781.354.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSwaI2.3350.0153845289498.150.200510.198460.23891RANDOM75.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.39-0.644.16-1.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.169
r_dihedral_angle_4_deg19.285
r_dihedral_angle_3_deg17.29
r_long_range_B_refined7.145
r_long_range_B_other7.145
r_dihedral_angle_1_deg6.83
r_scangle_other5.007
r_mcangle_it3.745
r_mcangle_other3.744
r_scbond_it3.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.169
r_dihedral_angle_4_deg19.285
r_dihedral_angle_3_deg17.29
r_long_range_B_refined7.145
r_long_range_B_other7.145
r_dihedral_angle_1_deg6.83
r_scangle_other5.007
r_mcangle_it3.745
r_mcangle_other3.744
r_scbond_it3.308
r_scbond_other3.308
r_mcbond_it2.418
r_mcbond_other2.41
r_angle_refined_deg2.127
r_angle_other_deg1.746
r_chiral_restr0.115
r_bond_refined_d0.018
r_gen_planes_refined0.013
r_bond_other_d0.01
r_gen_planes_other0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7576
Nucleic Acid Atoms2127
Solvent Atoms133
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing