4ZTG

Ebola virus nucleoprotein bound to VP35 chaperoning peptide P22121


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP527712% PEG 6000, 100 mM MES pH 5.0
Crystal Properties
Matthews coefficientSolvent content
2.4349.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.349α = 90
b = 92.398β = 90
c = 133.626γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M1000 um thick sensor2014-03-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.0332APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.846.299.70.0840.0360.99912.96.31082579.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9598.41.0420.4490.8111.66.21486

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8459707107899.650.26250.25920.2933RANDOM90.816
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.428.12-3.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.701
r_dihedral_angle_3_deg15.59
r_dihedral_angle_4_deg12.3
r_mcangle_it4.747
r_mcbond_it4.144
r_angle_other_deg4.096
r_mcbond_other3.921
r_dihedral_angle_1_deg1.714
r_angle_refined_deg1.593
r_chiral_restr0.084
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.701
r_dihedral_angle_3_deg15.59
r_dihedral_angle_4_deg12.3
r_mcangle_it4.747
r_mcbond_it4.144
r_angle_other_deg4.096
r_mcbond_other3.921
r_dihedral_angle_1_deg1.714
r_angle_refined_deg1.593
r_chiral_restr0.084
r_bond_refined_d0.012
r_gen_planes_other0.006
r_gen_planes_refined0.005
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2640
Nucleic Acid Atoms
Solvent Atoms17
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
XDSdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction