X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.252951.5 M ammonium sulfate, 12% glycerol, 0.1M Hepes, pH 7.25, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.6854.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.197α = 90
b = 85.197β = 90
c = 139.725γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVOsmic Mirrors2005-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.419.9698.60.0610.061112.6823203232031135
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4899.50.2990.2993.42.65

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT2.419.272315021956119498.440.24360.24360.24070.2995RANDOM27.54
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.06-0.03-0.060.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.082
r_dihedral_angle_4_deg16.18
r_dihedral_angle_3_deg15.974
r_dihedral_angle_1_deg6.044
r_angle_refined_deg1.127
r_scangle_it0.832
r_scbond_it0.509
r_mcangle_it0.463
r_nbtor_refined0.304
r_mcbond_it0.265
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.082
r_dihedral_angle_4_deg16.18
r_dihedral_angle_3_deg15.974
r_dihedral_angle_1_deg6.044
r_angle_refined_deg1.127
r_scangle_it0.832
r_scbond_it0.509
r_mcangle_it0.463
r_nbtor_refined0.304
r_mcbond_it0.265
r_symmetry_vdw_refined0.242
r_symmetry_hbond_refined0.239
r_nbd_refined0.198
r_xyhbond_nbd_refined0.135
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3514
Nucleic Acid Atoms
Solvent Atoms146
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
StructureStudiodata collection
d*TREKdata reduction
d*TREKdata scaling
SHELXSphasing