2M3L

Solution structure of the C-terminal zinc-binding domain of HPV51 oncoprotein E6


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
22D 1H-13C HSQC aliphatic1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
32D 1H-13C HSQC aromatic0.9 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide100% D2O1807.4ambient283
43D HNCACB1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
53D HNHA1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
63D 1H-15N NOESY1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
73D 1H-13C HSQC NOESY aliphatic0.9 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide100% D2O1807.4ambient283
83D 1H-13C NOESY aromatic0.9 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide100% D2O1807.4ambient283
93D HCCH-COSY0.9 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide100% D2O1807.4ambient283
103D HNCO1.13 mM [U-100% 13C; U-100% 15N] E6, 90 mM sodium chloride, 45 mM L-arginine, 45 mM L-glutamate, 9 mM DTT, 0.05 w/v sodium azide90% H2O/10% D2O1807.4ambient283
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvanceIII750
2BrukerAvanceIII600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealing, molecular dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA3Guntert, Mumenthaler and Wuthrich
2refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
3data analysisCARAKeller and Wuthrich
4collection & processingTOPSPINBruker Biospin
5refinementCYANA3Guntert, Mumenthaler and Wuthrich