2LVH
Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
2 | 2D 1H-13C HSQC | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
3 | 2D 1H-13C HSQC aliphatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
4 | 3D CBCA(CO)NH | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
5 | 3D HNCACB | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
6 | 3D HNCO | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
7 | 3D C(CO)NH | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
8 | 3D H(CCO)NH | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
9 | 3D HNHA | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
10 | 3D 1H-15N NOESY | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
11 | 2D 1H-13C HSQC aliphatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
12 | 2D 1H-13C HSQC aromatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
13 | 2D (HB)CB(CGCD)HD aromatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
14 | 2D (HB)CB(CGCDCE)HE aromatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
15 | 3D 1H-13C NOESY aliphatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 | |
16 | 3D 1H-13C NOESY aromatic | 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 | 88% H2O/12% D2O | 200 | 7.4 | ambient | 298.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | NMR System | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | VnmrJ |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VnmrJ | 2.3A | Varian |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | 5.3 | Johnson, One Moon Scientific |
4 | peak picking | NMRView | 5.3 | Johnson, One Moon Scientific |
5 | chemical shift assignment | NMRView | 5.3 | Johnson, One Moon Scientific |
6 | automated noe assignment | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
7 | structure solution | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
8 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
9 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
10 | dihedral constraints | TALOS | Cornilescu, Delaglio and Bax | |
11 | structure analysis | Procheck | 3.5.4 | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho |
12 | structure analysis | WhatCheck | Vriend | |
13 | data analysis | MOLMOL | 2K.2 | Koradi, Billeter and Wuthrich |