2LJZ
Structure of the C-terminal domain of HPV16 E6 oncoprotein
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
2 | 2D 1H-13C HSQC aliphatic | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
3 | 2D 1H-13C HSQC aromatic | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
4 | 3D HNCA | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
5 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
6 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
7 | 3D HBHA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
8 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
9 | 3D HCCH-COSY | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
10 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
11 | 3D 1H-13C NOESY aliphatic | 1 mM [U-100% 13C; U-100% 15N] E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
12 | 2D 1H-1H NOESY | 1 mM E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 | |
13 | 2D 1H-1H NOESY | 1 mM E6 | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | ambient | 286 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | AVANCE | 950 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was determined using noe and dihedral angle restraints |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | CARA | 1.8.3 | Keller and Wuthrich |
4 | peak picking | ATNOS/CANDID | Herrmann, Guntert and Wuthrich | |
5 | automatic noe assignment | ATNOS/CANDID | Herrmann, Guntert and Wuthrich | |
6 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |