2LJY

Haddock model structure of the N-terminal domain dimer of HPV16 E6


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.3 mM [U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
22D 1H-13C HSQC aliphatic0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
32D 1H-13C HSQC aromatic0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
43D HNCA0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
53D HNCACB0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
63D HN(CO)CA0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
73D HCCH-TOCSY0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
83D HCCH-COSY0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
93D 1H-15N NOESY0.3 mM [U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
103D 1H-13C NOESY aliphatic0.3 mM [U-100% 13C; U-100% 15N] E690% H2O/10% D2O50 mM NaCl6.8ambient296
112D 1H-1H NOESY0.3 mM E690% H2O/10% D2O50 mM NaCl6.8ambient296
122D 1H-1H NOESY0.3 mM E690% H2O/10% D2O50 mM NaCl6.8ambient296
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe dimer structures were calculated using Ambiguous Interaction restrains, unambiguous inter-molecular NOE-derived distance restraints and dihedral angles.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.1Bruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisCARA1.8.3Keller and Wuthrich
4structure calculationHADDOCK_webserverUtrecht Biomolecular Interaction web portal
5refinementHADDOCK_webserverUtrecht Biomolecular Interaction web portal